Jatropha Genome Database

JcCB0045901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045901.10 + phase: 1 /partial/short
         (48 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g19260.1                                                        60   6e-10
Glyma10g04900.1                                                        56   9e-09

>Glyma13g19260.1 
          Length = 132

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 1   SSSEIQSALRDESLRKLIRSIDSAADPESELEKAMGVEAFRIFTDKVL 48
           SSSEI+ AL DE+L++LI  ID +++ E+EL+KAM  EAFR+FTDK+L
Sbjct: 80  SSSEIRDALNDEALQELICRIDGSSNAENELDKAMAEEAFRLFTDKIL 127


>Glyma10g04900.1 
          Length = 132

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 39/48 (81%)

Query: 1   SSSEIQSALRDESLRKLIRSIDSAADPESELEKAMGVEAFRIFTDKVL 48
           SSSEI+ AL D++L++LI  ID +++ E+EL+KAM  EAFR+ TDK+L
Sbjct: 80  SSSEIRDALNDKALQELICRIDCSSNAENELDKAMAEEAFRLLTDKIL 127