Jatropha Genome Database

JcCB0045301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045301.20 + phase: 2 /pseudo/partial
         (106 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g15480.1                                                        69   1e-12
Glyma20g15960.1                                                        65   2e-11
Glyma11g31120.1                                                        63   6e-11
Glyma13g06880.1                                                        60   5e-10
Glyma11g31150.1                                                        60   8e-10

>Glyma20g15480.1 
          Length = 395

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query: 57  VMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           ++GN+PEM+ +RPTFRW+   MKEM T+I  IRLG  +VIPV CP  A +
Sbjct: 18  IIGNLPEMLTHRPTFRWIQNLMKEMNTEIACIRLGNVHVIPVTCPTIARE 67


>Glyma20g15960.1 
          Length = 504

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)

Query: 57  VMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITA 104
           ++GN+PEM+  RPTFRW+ + M EM T+I  I+LG  +VIPV CP  A
Sbjct: 17  IIGNLPEMVANRPTFRWIQKLMNEMNTEIACIQLGNVHVIPVTCPTIA 64


>Glyma11g31120.1 
          Length = 537

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 57  VMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           ++GN+PEM+  +P  +W++  MKEM T+I  IRLG   VIPV CP  AS+
Sbjct: 58  IVGNLPEMLANKPAHKWIHNLMKEMNTEIACIRLGNAYVIPVTCPTIASE 107


>Glyma13g06880.1 
          Length = 537

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 57  VMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           ++GN+PEM+  +P  +W++  MKEM T+I  IRLG   VIPV CP  A +
Sbjct: 58  IVGNLPEMLANKPAHKWIHNLMKEMNTEIACIRLGNAYVIPVTCPTIARE 107


>Glyma11g31150.1 
          Length = 364

 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 57  VMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           ++GN+P+M+  +P F W++  M+EMKT+I  IRLG  +VIPV CP  A +
Sbjct: 51  IVGNLPQMLANKPVFCWIHNLMQEMKTEIACIRLGNVHVIPVTCPSIACE 100