Jatropha Genome Database

JcCB0045051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045051.10 + phase: 0 /partial
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g04950.1                                                       168   1e-42
Glyma02g44000.1                                                       162   8e-41
Glyma02g44000.3                                                       162   9e-41
Glyma15g03870.1                                                        59   2e-09
Glyma13g41520.1                                                        57   8e-09

>Glyma14g04950.1 
          Length = 1370

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 97/141 (68%), Gaps = 3/141 (2%)

Query: 1   MEEERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXX 60
           ME E+      SLVF VNG+RFELS VDPSTTLL+FLRT+T FKS               
Sbjct: 1   MELEK---TPTSLVFGVNGERFELSHVDPSTTLLQFLRTRTRFKSVKLGCGEGGCGACVV 57

Query: 61  XXSKYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQC 120
             SKY+PVLDQVED            I+  SITTSEG+GNSK+GFH IH+RF+GFHA+QC
Sbjct: 58  LISKYDPVLDQVEDFTASSCLTLLCSIHGCSITTSEGIGNSKEGFHPIHKRFAGFHATQC 117

Query: 121 GFCTPGMCMSLFGALVKAEKT 141
           GFCTPGMC+SLFG LV AEKT
Sbjct: 118 GFCTPGMCVSLFGTLVNAEKT 138


>Glyma02g44000.1 
          Length = 1367

 Score =  162 bits (411), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 93/140 (66%)

Query: 4   ERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXXXXS 63
           E E     SL+F VNG++FEL +VDPS TLLEFLR  TSFKS                 S
Sbjct: 2   ELELKTPTSLIFGVNGEKFELYNVDPSITLLEFLRNHTSFKSVKLGCGEGGCGACVVLIS 61

Query: 64  KYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGFC 123
           KY+PV D+VED            I+  SITTSEG+GNSKDGFH IH+R +GFHA+QCGFC
Sbjct: 62  KYDPVHDRVEDFTASSCLTLLCSIHGCSITTSEGIGNSKDGFHPIHERIAGFHATQCGFC 121

Query: 124 TPGMCMSLFGALVKAEKTDR 143
           TPGMC+SL+G LV AEKT+R
Sbjct: 122 TPGMCVSLYGTLVNAEKTNR 141


>Glyma02g44000.3 
          Length = 1366

 Score =  162 bits (411), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 93/140 (66%)

Query: 4   ERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXXXXS 63
           E E     SL+F VNG++FEL +VDPS TLLEFLR  TSFKS                 S
Sbjct: 2   ELELKTPTSLIFGVNGEKFELYNVDPSITLLEFLRNHTSFKSVKLGCGEGGCGACVVLIS 61

Query: 64  KYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGFC 123
           KY+PV D+VED            I+  SITTSEG+GNSKDGFH IH+R +GFHA+QCGFC
Sbjct: 62  KYDPVHDRVEDFTASSCLTLLCSIHGCSITTSEGIGNSKDGFHPIHERIAGFHATQCGFC 121

Query: 124 TPGMCMSLFGALVKAEKTDR 143
           TPGMC+SL+G LV AEKT+R
Sbjct: 122 TPGMCVSLYGTLVNAEKTNR 141


>Glyma15g03870.1 
          Length = 1356

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 11  NSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXXXXSKYNPVLD 70
           N  +  VNG R  L       TLLE+LR                        S+++  L 
Sbjct: 5   NEAILYVNGVRRVLPDGFAHFTLLEYLR-DIGLTGTKLGCGEGGCGACTVMVSQFDRRLK 63

Query: 71  QVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGFCTPGMCMS 130
           +               +    + T EGLG+ K G H + +  +  H SQCGFCTPG  MS
Sbjct: 64  KCSHYAINACLAPLYSVEGMHVITVEGLGSCKRGLHPVQESLARAHGSQCGFCTPGFVMS 123

Query: 131 LFGALVKAEKT 141
           ++ AL+++ +T
Sbjct: 124 MY-ALLRSSQT 133


>Glyma13g41520.1 
          Length = 1380

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 63  SKYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQCGF 122
           S+Y+ +L +               +    + T EGLG+ K G H + +  +  H SQCGF
Sbjct: 87  SQYDRILKKCSHYAINACLAPLYSVEGMHVITVEGLGSCKRGLHPVQESLARAHGSQCGF 146

Query: 123 CTPGMCMSLFGALVKAEKT 141
           CTPG  MS++ AL+++ +T
Sbjct: 147 CTPGFVMSMY-ALLRSSQT 164