Jatropha Genome Database

JcCB0044401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044401.20 - phase: 0 /partial
         (61 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g10220.1                                                        56   1e-08
Glyma13g29070.1                                                        53   7e-08
Glyma05g27280.1                                                        52   1e-07
Glyma15g09980.1                                                        50   5e-07

>Glyma08g10220.1 
          Length = 150

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 8/63 (12%)

Query: 1   MEEKLKSPVGTPTCSSETASQKL---PSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPY 57
           ME+++ +P G     SE +S  L   P  +  P  GLSMKRS+QRFLQKR +R+  TSPY
Sbjct: 79  MEKRVMTPTG-----SEPSSPILLQSPHNMYSPGTGLSMKRSLQRFLQKRKNRVQETSPY 133

Query: 58  NHE 60
           +HE
Sbjct: 134 HHE 136


>Glyma13g29070.1 
          Length = 138

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 1   MEEKLKSPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
           +EE++++P G+   S   A  +  +QL  P  GLSM++S+QRFLQKR +R+   SPY+H
Sbjct: 82  LEERVRTPTGSEPSSP--AVMQSNNQLYSPGTGLSMRKSLQRFLQKRKNRVQEASPYHH 138


>Glyma05g27280.1 
          Length = 134

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 9   VGTPTCSSETASQKLPS---QLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
           V TPT S  ++   L S    +  PS GLSMKRS+QRFLQKR +R+  TSPY+H
Sbjct: 81  VMTPTGSEPSSPILLQSPHNNMYSPSTGLSMKRSLQRFLQKRKNRVQETSPYHH 134


>Glyma15g09980.1 
          Length = 133

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 1   MEEKLKSPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
           +EE++++P G+   SS T  Q   +QL  P  G SM++S+QRFLQKR +R+   SPY H
Sbjct: 77  LEERVRTPTGS-EPSSPTVMQS-NNQLYSPGTGPSMRKSLQRFLQKRRNRVQEASPYRH 133