Jatropha Genome Database

JcCB0044401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044401.10 + phase: 0 /partial/short
         (43 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g10230.1                                                        75   1e-14
Glyma08g10250.2                                                        75   2e-14
Glyma08g10250.1                                                        75   2e-14
Glyma08g10290.1                                                        74   3e-14
Glyma08g18750.3                                                        74   5e-14
Glyma08g18750.1                                                        74   5e-14
Glyma05g27290.1                                                        73   5e-14
Glyma15g40140.1                                                        72   1e-13
Glyma15g40140.2                                                        72   1e-13
Glyma05g27300.1                                                        72   2e-13
Glyma18g42590.1                                                        62   2e-10

>Glyma08g10230.1 
          Length = 407

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPRL 43
           KVLQMLR+EFELTMALSGCRSL+EITR+H+V +WD PR  P+L
Sbjct: 365 KVLQMLRDEFELTMALSGCRSLKEITRDHVVTEWDRPRFAPKL 407


>Glyma08g10250.2 
          Length = 370

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPRL 43
           KVLQMLR+EFELTMALSGCRSL+EITR+H+V +WD PR  P+L
Sbjct: 328 KVLQMLRDEFELTMALSGCRSLKEITRDHVVTEWDHPRFSPKL 370


>Glyma08g10250.1 
          Length = 370

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPRL 43
           KVLQMLR+EFELTMALSGCRSL+EITR+H+V +WD PR  P+L
Sbjct: 328 KVLQMLRDEFELTMALSGCRSLKEITRDHVVTEWDHPRFSPKL 370


>Glyma08g10290.1 
          Length = 370

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 39/43 (90%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPRL 43
           KVLQMLR+EFELTMALSGCRSL+EITR+H++ +WD PR  P+L
Sbjct: 328 KVLQMLRDEFELTMALSGCRSLKEITRDHVITEWDHPRFSPKL 370


>Glyma08g18750.3 
          Length = 371

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 37/41 (90%)

Query: 2   VLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPR 42
           VL+MLREEFELTMALSGC SL++ITR+HIV DWD PR +PR
Sbjct: 326 VLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQPRTIPR 366


>Glyma08g18750.1 
          Length = 371

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 37/41 (90%)

Query: 2   VLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPR 42
           VL+MLREEFELTMALSGC SL++ITR+HIV DWD PR +PR
Sbjct: 326 VLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQPRTIPR 366


>Glyma05g27290.1 
          Length = 403

 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 39/43 (90%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPRL 43
           KVLQMLR+EFELTMALSGCRSL+EITR+H++ +WD PR  P+L
Sbjct: 361 KVLQMLRDEFELTMALSGCRSLKEITRDHVLTEWDRPRFSPKL 403


>Glyma15g40140.1 
          Length = 371

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 37/41 (90%)

Query: 2   VLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPR 42
           VL+MLREEFELTMALSGC SL++ITR+HIV DWD PR +PR
Sbjct: 326 VLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQPRILPR 366


>Glyma15g40140.2 
          Length = 269

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 37/42 (88%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPR 42
            VL+MLREEFELTMALSGC SL++ITR+HIV DWD PR +PR
Sbjct: 223 NVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQPRILPR 264


>Glyma05g27300.1 
          Length = 368

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 38/43 (88%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPVPRL 43
           KVLQMLR+E ELTMALSGCRSL+EITR+H+V +WD P+  P+L
Sbjct: 326 KVLQMLRDELELTMALSGCRSLKEITRDHVVTEWDRPKFSPKL 368


>Glyma18g42590.1 
          Length = 263

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPR 38
           KVLQMLR+EFELTM LSG  SL+ IT NH+V +WD PR
Sbjct: 221 KVLQMLRDEFELTMVLSGWHSLKVITHNHVVIEWDHPR 258