Jatropha Genome Database

JcCB0041541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041541.10 + phase: 0 /pseudo/partial
         (106 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g15150.1                                                        97   5e-21
Glyma04g39720.1                                                        96   8e-21
Glyma07g00320.1                                                        68   2e-12
Glyma20g04580.1                                                        65   2e-11
Glyma18g44080.1                                                        57   4e-09

>Glyma06g15150.1 
          Length = 362

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 4/81 (4%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWEKTXXXXXXXKEMEI 79
           +LG+I+GFD+ +G W+EL+G+EK LPRFL GATMA++GG L VVWE          EMEI
Sbjct: 265 YLGKIKGFDVGRGVWEELKGLEKGLPRFLCGATMADLGGKLCVVWE----CQGNENEMEI 320

Query: 80  WCAEIEVEKNVKEELWGKVKW 100
           WCAEI V+KN   ELWG++ W
Sbjct: 321 WCAEIGVKKNSDGELWGQLVW 341


>Glyma04g39720.1 
          Length = 359

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 4/81 (4%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWEKTXXXXXXXKEMEI 79
           +LG+I+GFD+ +G W+EL+G+E  LPRFL GATMA++GG L VVWE         KEMEI
Sbjct: 262 YLGKIKGFDVGRGVWEELKGLENALPRFLCGATMADLGGKLCVVWE----CQCNGKEMEI 317

Query: 80  WCAEIEVEKNVKEELWGKVKW 100
           WCAEI V+KN   ELWG++ W
Sbjct: 318 WCAEIGVKKNSDGELWGQLGW 338


>Glyma07g00320.1 
          Length = 191

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 18/81 (22%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWEKTXXXXXXXKEMEI 79
           +LG+I+GF++ +G W+EL+G+EK LPRFL GA M ++GG L V                 
Sbjct: 116 YLGKIKGFNVGRGVWEELKGLEKGLPRFLCGARMTDLGGKLCV----------------- 158

Query: 80  WCAEIEVEKNVKEELWGKVKW 100
            CAEI V+KN   ELWG++ W
Sbjct: 159 -CAEIGVKKNSDGELWGQLGW 178


>Glyma20g04580.1 
          Length = 148

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 18/81 (22%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWEKTXXXXXXXKEMEI 79
           +LG+I+GF++ +  W+EL+G+EK LPRFL GATM ++GG L V                 
Sbjct: 83  YLGKIKGFNVGREVWEELKGLEKGLPRFLCGATMTDLGGKLCV----------------- 125

Query: 80  WCAEIEVEKNVKEELWGKVKW 100
            C EI V+KN   ELWG++ W
Sbjct: 126 -CTEIGVKKNSDGELWGQLGW 145


>Glyma18g44080.1 
          Length = 222

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 38/46 (82%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWE 65
           +LG+I+GF++ +G W+EL+G+EK LP+FL  AT+ ++GG L VVWE
Sbjct: 167 YLGKIKGFNVGRGAWEELKGLEKGLPKFLCWATVVDLGGKLCVVWE 212