Jatropha Genome Database

JcCB0041131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041131.10 + phase: 0 /pseudo
         (234 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g34090.1                                                       132   3e-31
Glyma18g36820.1                                                        92   6e-19
Glyma08g46890.1                                                        73   3e-13

>Glyma20g34090.1 
          Length = 224

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 113/242 (46%), Gaps = 48/242 (19%)

Query: 1   MRKAKTTGEVAVMDLS--------LGVRTRAKTLALQRQARLXXXXXXXXXXXXXXXXXX 52
           M+KAK  GE+A+++ +        +GVRTRAKTLALQ+                      
Sbjct: 5   MKKAKPKGELALVESTTSNTTTSYMGVRTRAKTLALQKS-----------HAQQHELAAT 53

Query: 53  XXXYLQLRSRRLVKPPTLVNDSKRQKQSQNKEAQNPNPNXXXXXXXXXXXXXXXXQKNEV 112
              YLQLRSRRL KPP LV+  KR K    K   +P P                  K+  
Sbjct: 54  SDSYLQLRSRRLQKPPILVHSPKRPKHPNPK---SPIPEPPRLGLASERDATLNHNKDNT 110

Query: 113 SGENKEEVQXXXXXXXXXXXXXXXXXXXXLGIEASFGENVLDIEGRERSTRESTPCSLIR 172
             EN E                          EASFGENVLD EGRERSTRESTPCSLIR
Sbjct: 111 LHENAEPQ------------------------EASFGENVLDFEGRERSTRESTPCSLIR 146

Query: 173 DPEXXXXXXXXXXXXXXXXXXXXIQNSAHRHIPTSLEMDEFFARAEEEQQRQFIEKXIYS 232
           D +                     +++A R IPTS EMDEFFA  EE QQ++FIEK  Y+
Sbjct: 147 DSDTVRTPGSTTRPTCSAEAYRRTEHAARRQIPTSREMDEFFAEIEEAQQKKFIEK--YN 204

Query: 233 FN 234
           F+
Sbjct: 205 FD 206


>Glyma18g36820.1 
          Length = 205

 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 103/243 (42%), Gaps = 69/243 (28%)

Query: 1   MRKAKTTGEVAVMDL-------SLGVRTRAKTLALQRQARLXXXXXXXXXXXXXXXXXXX 53
           M+K+K  G+VA + +        LGVRTRAKTLALQ  +                     
Sbjct: 5   MKKSKIAGDVAAVIMEAPPPHSHLGVRTRAKTLALQNTS------------------PDS 46

Query: 54  XXYLQLRSRRLVK-PPTLVNDSKRQKQSQNKEAQNPNPNXXXXXXXXXXXXXXXXQKNEV 112
             YLQLRSRRL+K PPT   + +R   S  + A N                         
Sbjct: 47  SAYLQLRSRRLLKLPPTPPENPRR---SAAETAAN------------------SRLAKTT 85

Query: 113 SGENKEEVQXXXXXXXXXXXXXXXXXXXXLGIEASFGENVLDIEGRE-RSTRESTPCSLI 171
           S  N E+                         E SFGEN LD E RE RSTRESTPCS I
Sbjct: 86  SSRNAEKFASFDDDN---------------NTECSFGENFLDAEPREERSTRESTPCSFI 130

Query: 172 RDPEXXXXXXXXXXXXXXXXXXXXIQNSAHRHIPTSLEMDEFFARAEEEQQRQFIEKXIY 231
           RD                      IQ    R+IPT+ EM+EFFA AE++QQ  F++K  Y
Sbjct: 131 RDSNAIHTPGSTTRPRTRQIIHEHIQ----RNIPTAYEMEEFFAYAEKQQQTIFMDK--Y 184

Query: 232 SFN 234
           +F+
Sbjct: 185 NFD 187


>Glyma08g46890.1 
          Length = 201

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 52/91 (57%), Gaps = 7/91 (7%)

Query: 145 EASFGENVLDIEGRE-RSTRESTPCSLIRDPEXXXXXXXXXXXXXXXXXXXXIQNSAHRH 203
           E SFGEN LD E RE RSTRE TPCSLIRD                      I     R+
Sbjct: 99  ECSFGENFLDAEPREERSTREGTPCSLIRD----SNAIHTPGSTTRPRTRQIIHEHVQRN 154

Query: 204 IPTSLEMDEFFARAEEEQQRQFIEKXIYSFN 234
           IPT+ EM+EFFA AE++QQ  F++K  Y+F+
Sbjct: 155 IPTAYEMEEFFAYAEKQQQTIFMDK--YNFD 183