Jatropha Genome Database

JcCB0040601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0040601.20 - phase: 0 
         (270 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g14080.1                                                       175   5e-44
Glyma01g09640.1                                                       172   3e-43

>Glyma02g14080.1 
          Length = 252

 Score =  175 bits (443), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/272 (43%), Positives = 155/272 (56%), Gaps = 24/272 (8%)

Query: 1   MEDVLTEIPPPSRFFQEDLXXXXXXXXXXXXXXXXXXXXKPDQPLCPSLLIIALSTPSLY 60
           MEDV+TE  PPSRF +EDL                    K  Q L PSLLIIALS  SL 
Sbjct: 1   MEDVITEAAPPSRFLEEDLNIFTPPSPPLPKPFLIFPHNK--QTLKPSLLIIALSPSSLA 58

Query: 61  VFHHVSSKTLI--GSVFIPEIPFSGNSIDPSLRDKSCNIYALNDADKLTLLVSIQCSVSA 118
           +F+   + TL    S+ +PE+P S       L D + +I  L+     TLL  +   V +
Sbjct: 59  LFNQTLTLTLTPLASLILPELPLS-------LPDHNVSILPLSPD---TLLAPVPFPVPS 108

Query: 119 ERSNVVAKLLIGEQIIPERVLILDSIKIQNFRGKLSSDEACAFKLETSTE-RKGHTNGCG 177
            R++ VA+ L+   I P+ VL+LDS+   NFRGKLSSD+A AFKLETS E ++ H     
Sbjct: 109 HRAHAVARALLS--IRPDSVLVLDSLDPTNFRGKLSSDDAVAFKLETSAEMKRAHDEKLL 166

Query: 178 GSSLLKGLDYLPSGSMVDGLAAALLARCQMRNMKGTLCVSWPEHDGSAVALIKSVLQKNV 237
           G    + LDY PSGS+VDGL AA+LARCQ+ N++ +LCVSWP  D S VALIK +L + V
Sbjct: 167 G----EELDYYPSGSVVDGLGAAILARCQLMNIRASLCVSWPRFDKSVVALIKGLLGRRV 222

Query: 238 LHRINLSSNGNAEDKYLWSSRIKDSSFDSELY 269
           L        G ++D+ L   R +D    SELY
Sbjct: 223 LPGFEF---GLSDDEVLKIGRSRDRVVHSELY 251


>Glyma01g09640.1 
          Length = 252

 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/271 (43%), Positives = 153/271 (56%), Gaps = 22/271 (8%)

Query: 1   MEDVLTEIPPPSRFFQEDLXXXXXXXXXXXXXXXXXXXXKPDQPLCPSLLIIALSTPSLY 60
           MEDV+TE  PPSRF +EDL                    K   PL PSLLIIALS  SL 
Sbjct: 1   MEDVITEAAPPSRFLEEDLNIFTPPSPPLPTPFLIFPHNK--LPLKPSLLIIALSPSSLA 58

Query: 61  VFHHVSSKTLI--GSVFIPEIPFSGNSIDPSLRDKSCNIYALNDADKLTLLVSIQCSVSA 118
           +F+   + TL    S+ +PE+P S       L D + +I  L+     TLL  +   V  
Sbjct: 59  LFNQTLTLTLTPLASLILPELPLS-------LPDHNASILPLSPD---TLLAVVPFPVPP 108

Query: 119 ERSNVVAKLLIGEQIIPERVLILDSIKIQNFRGKLSSDEACAFKLETSTERKGHTNGCGG 178
            R++ VA+ L+   I P  VL+LDS+   NFRGKLSSDEA AFKLETS ERK  ++    
Sbjct: 109 HRAHAVARTLL--SIRPYSVLVLDSLDPTNFRGKLSSDEAVAFKLETSAERKMTSSE--- 163

Query: 179 SSLLKGLDYLPSGSMVDGLAAALLARCQMRNMKGTLCVSWPEHDGSAVALIKSVLQKNVL 238
             L + LDY PSGS+VDGL AA+LARCQ+ N++ +LC SWP  D S VALIK +L++ VL
Sbjct: 164 KLLGEELDYYPSGSVVDGLGAAILARCQVMNVRASLCFSWPRFDMSVVALIKGLLRRGVL 223

Query: 239 HRINLSSNGNAEDKYLWSSRIKDSSFDSELY 269
                   G ++D  L   + +D    SELY
Sbjct: 224 RGFEF---GLSDDGVLKIGKGRDRVLHSELY 251