Jatropha Genome Database

JcCB0037791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037791.20 - phase: 1 /TE/pseudo/partial
         (552 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g15130.2                                                        85   3e-16
Glyma08g10320.1                                                        60   9e-09
Glyma07g03280.1                                                        52   2e-06

>Glyma09g15130.2 
          Length = 672

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 16/209 (7%)

Query: 312 KKKWLSYFKNIPPLYLVAIVFDPRYRIDVLCDYLTIYYDILNLDVEDNININVVMHEVKQ 371
           K K+  Y+        VA V DPR+++ ++  Y ++ Y    L+          + EV  
Sbjct: 462 KDKFDRYWSKCSLPLAVAAVLDPRFKMKLVEYYFSLIYGSTALEH---------IKEVSD 512

Query: 372 NIMQLYNEFXXXXXXXXXXXXXXXXNIPQFPTQRVNGVGVAQQVLLQRQKRTRESSSISE 431
            I +L+N +                ++P       + +    + L    + ++  S IS+
Sbjct: 513 GIKELFNVYSICSTMIDQGSALPGSSLPSTSCSSRDRLKGFDRFL---HETSQGQSMISD 569

Query: 432 FDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFSXG 491
            D YL     F     ++DF IL+WW  H   +PILS++A+ +L  P+S +A E AFS G
Sbjct: 570 LDKYLEEPI-FP---RNSDFNILNWWKVHMPRYPILSMMARDVLGTPMSTMAPELAFSTG 625

Query: 492 GNILDETRSRMTPDSLEAQACVDDWTKAE 520
           G +LD +RS + PD+ EA  C  DW + E
Sbjct: 626 GRVLDSSRSSLNPDTREALICTQDWLQNE 654


>Glyma08g10320.1 
          Length = 736

 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 451 FPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFSXGGNILDETRSRMTPDSLEAQ 510
           F IL WW   +  + +L+ +A+ ILA PVS V+ E AFS G ++LD   S + P ++EA 
Sbjct: 612 FDILRWWKGKSTKYYVLAHMARDILAIPVSSVSFEDAFSTGDHVLDRYHSCLDPTTVEAL 671

Query: 511 ACVDDWTKAELR 522
            C   W    LR
Sbjct: 672 ICSKSWLSHNLR 683


>Glyma07g03280.1 
          Length = 661

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 450 DFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFSXGGNILDETRSRMTPDSLEA 509
           +F IL WW  +   +P LS +A  IL+ PVS ++ +  F      +D  RS ++  +LEA
Sbjct: 591 EFDILSWWRVNGLKYPTLSRIASDILSLPVSTLSADSIFDMQIRKMDSYRSSLSSLTLEA 650

Query: 510 QACVDDWTKAE 520
             C  DW ++E
Sbjct: 651 LICAKDWFQSE 661