Jatropha Genome Database

JcCB0037201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037201.10 - phase: 2 /pseudo/partial
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g21450.2                                                       126   1e-29
Glyma13g21450.1                                                       126   1e-29
Glyma10g07580.1                                                        72   4e-13

>Glyma13g21450.2 
          Length = 369

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 73/101 (72%), Gaps = 15/101 (14%)

Query: 27  LYILDYFFYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQACSYEPDLGWWLLGNKV 86
           LYILDYF +EEYMTSTWDIIAERLGFMLVFGDLVWIPF+FSIQ        GWWLL N V
Sbjct: 186 LYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLVWIPFSFSIQ--------GWWLLMNSV 237

Query: 87  ELTMAAVIANCFVFLIGL-------TSKSMFSKRIQKPSYG 120
           ELT AA++ANCFVFLIG          K +F K  + P +G
Sbjct: 238 ELTPAAIVANCFVFLIGYMVFRGANKQKHVFKKNPKAPIWG 278


>Glyma13g21450.1 
          Length = 374

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 73/101 (72%), Gaps = 15/101 (14%)

Query: 27  LYILDYFFYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQACSYEPDLGWWLLGNKV 86
           LYILDYF +EEYMTSTWDIIAERLGFMLVFGDLVWIPF+FSIQ        GWWLL N V
Sbjct: 191 LYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLVWIPFSFSIQ--------GWWLLMNSV 242

Query: 87  ELTMAAVIANCFVFLIGL-------TSKSMFSKRIQKPSYG 120
           ELT AA++ANCFVFLIG          K +F K  + P +G
Sbjct: 243 ELTPAAIVANCFVFLIGYMVFRGANKQKHVFKKNPKAPIWG 283


>Glyma10g07580.1 
          Length = 129

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 39/51 (76%), Gaps = 8/51 (15%)

Query: 53  MLVFGDLVWIPFTFSIQACSYEPDLGWWLLGNKVELTMAAVIANCFVFLIG 103
           MLVFGDLVWIPFTFSIQ        GWWLL N VE T AA++ANCFVFLIG
Sbjct: 1   MLVFGDLVWIPFTFSIQ--------GWWLLMNSVESTPAAIVANCFVFLIG 43