Jatropha Genome Database

JcCB0035061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035061.10 - phase: 0 /pseudo
         (220 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g00380.1                                                       231   4e-61

>Glyma06g00380.1 
          Length = 306

 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 132/166 (79%), Gaps = 4/166 (2%)

Query: 28  RPAVILPGLGNNTADYQKLEVTLKE-YGVPTVVAKVSRFDWFRNAAGLVDPNYWRGTLQP 86
           RPAVILPGLGNN+ DYQ L+ TL + YGV TVVAKVSR DWFRNAAGL+D NYWRGTL P
Sbjct: 28  RPAVILPGLGNNSGDYQSLKQTLNDKYGVATVVAKVSRLDWFRNAAGLLDRNYWRGTLLP 87

Query: 87  RPVLDWYMKRIQEAVNEAKELAQGGTLSLIGHSAGGWLARVYMEEFGLS-DISXXXXXXX 145
           RPVLDWY++R+ +AV EAKE A  GT+SLIGHSAGGWLARVYMEEFG+S DIS       
Sbjct: 88  RPVLDWYLERVHDAVQEAKEGAANGTVSLIGHSAGGWLARVYMEEFGVSNDISLLLTLGT 147

Query: 146 XXXXXXKGVPGVIDQTRGLLYYVEEHCAKAVYNP--QLKYVCIAGR 189
                 KGV GVIDQTRGLL YVE++C+K VY P  Q+KYVCIAGR
Sbjct: 148 PHLPPPKGVQGVIDQTRGLLDYVEQNCSKPVYTPQAQVKYVCIAGR 193