Jatropha Genome Database

JcCB0034671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.20 + phase: 0 /partial
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g18240.1                                                        89   1e-18
Glyma05g21320.1                                                        75   1e-14

>Glyma17g18240.1 
          Length = 369

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 53/90 (58%), Gaps = 29/90 (32%)

Query: 15  ETSSGDAPPSNSGVFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTCS 74
           + S+GD PPSNSGV+SEGE+VLAYHGPRIYEAKA F+                       
Sbjct: 34  DASAGDIPPSNSGVYSEGEKVLAYHGPRIYEAKASFT----------------------- 70

Query: 75  LPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                 +L F  VQK E+RK EW+YFVHYL
Sbjct: 71  ------SLSFRRVQKTEIRKSEWKYFVHYL 94


>Glyma05g21320.1 
          Length = 319

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 39/90 (43%)

Query: 15  ETSSGDAPPSNSGVFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTCS 74
           + S+GD  PSNS V+SEGE+VLAYHGPRIYEAK                           
Sbjct: 15  DASAGDVQPSNSAVYSEGEKVLAYHGPRIYEAK--------------------------- 47

Query: 75  LPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                       VQKAE+RK EW+YFVHYL
Sbjct: 48  ------------VQKAEIRKSEWKYFVHYL 65