Jatropha Genome Database

JcCB0034671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.10 + phase: 0 
         (86 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g21360.1                                                        59   2e-09
Glyma17g18230.1                                                        57   4e-09

>Glyma05g21360.1 
          Length = 135

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 25 QARPLNTLESHGPRV--RDKGFFDGLFLGAIKQSGPSPGQGNRLTDSRSFGGINKDGPSP 82
          +ARPL+ +E+        +  FFD L LGA+K SGPSPG G++ T+S + GGI   GPSP
Sbjct: 26 EARPLSIIETGKSATGGEEVDFFDWLALGAMKDSGPSPGVGHKFTNSETLGGIKDSGPSP 85

Query: 83 -GQGH 86
           G+GH
Sbjct: 86 GGKGH 90



 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 24  TQARPLNTLESHGPRVRDKG--FFDGLFLGAIKQSGPSPG-QGNRLTDSRSFGGINKDGP 80
           T +  L  ++  GP    KG  F +   LG IK SGPS G +G++ T+S + G I   GP
Sbjct: 70  TNSETLGGIKDSGPSPGGKGHQFTNSETLGGIKNSGPSVGGEGHKFTNSETLGEIKDSGP 129

Query: 81  SPGQGH 86
           SPGQGH
Sbjct: 130 SPGQGH 135


>Glyma17g18230.1 
          Length = 170

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 6/64 (9%)

Query: 24  TQARPLNTLESH----GPRVRDKGFFDGLFLGAIKQSGPSPGQGNRLTDSRSFGGINKDG 79
           ++ARPL+ +E+     G  V D  FFD L LGA+K SGPSPG G++ T+S + GGI   G
Sbjct: 60  SEARPLSIIETEKSVTGGEVVD--FFDWLSLGAMKDSGPSPGVGHKFTNSETLGGIKDSG 117

Query: 80  PSPG 83
           PS G
Sbjct: 118 PSSG 121