Jatropha Genome Database

JcCB0033901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033901.10 - phase: 0 /pseudo/partial
         (70 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g45370.1                                                        53   8e-08

>Glyma08g45370.1 
          Length = 309

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 16/68 (23%)

Query: 1   MQTVTYEVVNASYVPTPQAKQQQNETM---------------LPMVMPSVDIFYSALRKA 45
           +QT +YE+ N SY PT Q +  + +TM               LP+VMPS+DI  SALRKA
Sbjct: 42  IQTNSYEISNGSYHPTVQ-QTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKA 100

Query: 46  KRVPPTKG 53
           ++V PTKG
Sbjct: 101 RKVSPTKG 108