Jatropha Genome Database

JcCB0033761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033761.10 + phase: 0 
         (225 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g27560.1                                                       177   6e-45
Glyma19g30530.1                                                        50   2e-06

>Glyma03g27560.1 
          Length = 233

 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 138/239 (57%), Gaps = 25/239 (10%)

Query: 2   ENLASLEPFLFRT-FQDSWISEAYARDTETLTKALQKSLFSDNNLICSDTQHPP------ 54
           EN+AS+EP + R    DSW++E +ARD + LTKALQKSL S   L   +    P      
Sbjct: 5   ENVASIEPCMLRPPVTDSWLAEFFARDADALTKALQKSL-SGTVLPDEENYFSPFLPKSD 63

Query: 55  ---TTPTASNVSGSDPETVAPPKRQRNGIPATSGXXXXXXXXXXXXXQTTFITADPANFR 111
               TPT S++SGSD ++ AP  R+R  +P  SG             QTTFITADPANFR
Sbjct: 64  PAVATPTVSSLSGSDQDS-AP--RRRAPLP-PSGKISKRKSRASKRSQTTFITADPANFR 119

Query: 112 QMVQQVTGVRFGNAQLPPVP---VLKPEPQRPG--TRLHAAAGCLPTLDTSAFLLDHHQQ 166
           QMVQQVTGVRFG A  P  P   V+KPEPQR     R  A AGCLPTLDTSAFLLDHHQQ
Sbjct: 120 QMVQQVTGVRFGGAGQPIAPAAGVVKPEPQRASGLARFPAGAGCLPTLDTSAFLLDHHQQ 179

Query: 167 PQMXXXXXXXXXXXXXXXXXXXXXXXXFPQPVVADGGPTAGLDYDTFSSFPTLESWKVM 225
                                      F QP++     +AGLD+DTFSSFPTLESWKVM
Sbjct: 180 -----VVGPSSVNSGPATGLSGPGPLPFAQPLLDASFASAGLDFDTFSSFPTLESWKVM 233


>Glyma19g30530.1 
          Length = 156

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 32/39 (82%), Gaps = 1/39 (2%)

Query: 2  ENLASLEPFLFRT-FQDSWISEAYARDTETLTKALQKSL 39
          +N+AS+EP++ R    DSW++E +ARD +TLT+ALQKSL
Sbjct: 5  QNVASIEPWMLRPPVTDSWLAEFFARDADTLTRALQKSL 43