Jatropha Genome Database

JcCB0033501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033501.20 + phase: 2 /TE
         (256 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g42470.1                                                        75   8e-14
Glyma10g16060.1                                                        58   8e-09
Glyma14g17420.1                                                        56   3e-08
Glyma01g07740.1                                                        49   5e-06

>Glyma15g42470.1 
          Length = 1094

 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 25/169 (14%)

Query: 106 YQGKNISNRLYLKEQFHTLKMAEGTKLSDHLSVLNGIVSELETLGVQTEDEDKALRLILS 165
           Y  K++ NRLYLK+  ++ KM E   + + L + N ++ +LE + V  +DED+AL L+  
Sbjct: 92  YMTKSLVNRLYLKQSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCY 151

Query: 166 LPSTYEHMKPVLKYGSKEVVYADVVSKLLIEERRLNEMK--------------NKSYEDS 211
           LP +Y H K  L +G   V   +V + L    + LNE K               K+++  
Sbjct: 152 LPKSYSHFKETLLFGRDSVSLDEVQTAL--NSKELNERKEKKSSASGEGLTARGKTFKKD 209

Query: 212 ALFVGTXXXXXXXXX-----XXVVCWVCGQTGHVRKDCP----NGGADS 251
           + F                   + C+ C + GH RK CP    NGG+++
Sbjct: 210 SEFDKKKQKPENQKNGEGNIFKIRCYHCKKEGHTRKVCPERQKNGGSNN 258


>Glyma10g16060.1 
          Length = 879

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 42/74 (56%)

Query: 126 MAEGTKLSDHLSVLNGIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M EGT L DHL  LN I+ EL  + V+ ED+D A+ L+ SLP +YE     L  G + V 
Sbjct: 1   MKEGTSLKDHLDELNSILMELRDIDVKIEDDDAAMILLASLPPSYESFVNSLSVGKECVT 60

Query: 186 YADVVSKLLIEERR 199
             +V S L + E R
Sbjct: 61  MEEVKSSLYLRELR 74


>Glyma14g17420.1 
          Length = 1459

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 25/149 (16%)

Query: 128 EGTKLSDHLSVLNGIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVVYA 187
           E   + + L + N ++ +LE + V  +DED+AL L+ SLP +Y H K  L +G   V   
Sbjct: 420 EDRSVEEQLDLFNKLILDLENIDVTIDDEDQALLLLCSLPKSYSHFKETLLFGRDSVSLD 479

Query: 188 DVVSKLLIEERRLNEMK--------------NKSYEDSALFVGTXXXXXXXXXX-----X 228
            V + L  + ++LNE K               K++   + F                   
Sbjct: 480 KVQAAL--KSKKLNERKEKKSSTSGEGLIARGKTFNKDSKFDKNKQKPENQKNDEGKIFK 537

Query: 229 VVCWVCGQTGHVRKDCP----NGGADSAR 253
           + C+ C + GH RK CP    NGG+++ +
Sbjct: 538 IRCYHCKKEGHTRKVCPERQKNGGSNNRK 566


>Glyma01g07740.1 
          Length = 334

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 20/155 (12%)

Query: 106 YQGKNISNRLYLKEQFHTLKMAEGTKLSDHLSVLNGIVSELETLGVQTEDEDKALRLILS 165
           Y  K+++NRL LK   + LK   G  L DH++  N  VS+L     +   E   L L+ S
Sbjct: 70  YVSKSLTNRLCLKMDLYQLKTEMGGDLDDHINKFNREVSQLLNANDKISYEGHVLLLLAS 129

Query: 166 LPSTYEHMKPVLKYGSKEVVYADVVSKLLIEERRLNEMKNKSYEDSALFV---------- 215
           LP +++ +  +L    +  +  D V+ +L E  R+    N  YE +A+ V          
Sbjct: 130 LPRSFKALVQMLLV-RRSTLNLDEVTTVLRENERMMRTGNVDYEHNAIAVVESERGRNHS 188

Query: 216 ---------GTXXXXXXXXXXXVVCWVCGQTGHVR 241
                                 + C+ CG+ GHV+
Sbjct: 189 RSHDGPRGRSKLQSHPQQDMSNIQCYYCGENGHVQ 223