Jatropha Genome Database

JcCB0033401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033401.20 + phase: 0 /partial
         (176 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g11630.1                                                       150   6e-37
Glyma11g11630.2                                                       150   6e-37
Glyma12g01900.1                                                        48   5e-06

>Glyma11g11630.1 
          Length = 376

 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 104/189 (55%), Gaps = 23/189 (12%)

Query: 5   KELCRNFQRGSCQYGERCKFLHPIX------------XXXXXXXXXXXXXXXXXXXXXXX 52
           +++CRNFQRGSCQYGERC++LH                                      
Sbjct: 2   RDICRNFQRGSCQYGERCRYLHVQQQRKPNVNGFGGQSSSYQQQNTNPFGFGSGSQQQQQ 61

Query: 53  XXXXXXGFGVQSKAANDFGNKQQQ---QFKPFENKWTRFS--PISNGGGGSQSRQPDNQP 107
                 GFG Q+ +  + G   +    Q+KPFENKW R S  P  NG       + +N  
Sbjct: 62  QKGNPFGFGKQNSSQLNGGPHSEHKPNQYKPFENKWNRQSSKPQQNG------VKSENNS 115

Query: 108 QAVNHKCTDPESCKREIIEDFEHEKPLWKLTCYGHSKKGPCDIFGDVSYEELRAVAYDDA 167
           +  +H CTDPE+CKR+I  DFE EKPLW LTCY H K  PCDI GD+SYEELRA AY+DA
Sbjct: 116 KQTDHICTDPENCKRQIAVDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRASAYEDA 175

Query: 168 KRGLSLQSI 176
           KRG++LQSI
Sbjct: 176 KRGMNLQSI 184


>Glyma11g11630.2 
          Length = 375

 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 104/189 (55%), Gaps = 23/189 (12%)

Query: 5   KELCRNFQRGSCQYGERCKFLHPIX------------XXXXXXXXXXXXXXXXXXXXXXX 52
           +++CRNFQRGSCQYGERC++LH                                      
Sbjct: 2   RDICRNFQRGSCQYGERCRYLHVQQQRKPNVNGFGGQSSSYQQQNTNPFGFGSGSQQQQQ 61

Query: 53  XXXXXXGFGVQSKAANDFGNKQQQ---QFKPFENKWTRFS--PISNGGGGSQSRQPDNQP 107
                 GFG Q+ +  + G   +    Q+KPFENKW R S  P  NG       + +N  
Sbjct: 62  QKGNPFGFGKQNSSQLNGGPHSEHKPNQYKPFENKWNRQSSKPQQNG------VKSENNS 115

Query: 108 QAVNHKCTDPESCKREIIEDFEHEKPLWKLTCYGHSKKGPCDIFGDVSYEELRAVAYDDA 167
           +  +H CTDPE+CKR+I  DFE EKPLW LTCY H K  PCDI GD+SYEELRA AY+DA
Sbjct: 116 KQTDHICTDPENCKRQIAVDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRASAYEDA 175

Query: 168 KRGLSLQSI 176
           KRG++LQSI
Sbjct: 176 KRGMNLQSI 184


>Glyma12g01900.1 
          Length = 148

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 22/142 (15%)

Query: 5   KELCRNFQRGSCQYGERCKFLHPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFGVQS 64
           +++CRNFQRGSCQYGERC++LH                                    Q 
Sbjct: 2   RDICRNFQRGSCQYGERCRYLHVQQQRKPNVNGFGGQSSSHQQQNTNPFGFGSGSGSQQQ 61

Query: 65  KAANDFG----NKQQ-----------QQFKPFENKWTRFS--PISNGGGGSQSRQPDNQP 107
           +  N FG    N  Q            Q+KPFENKW R S  P  NG      +  +N  
Sbjct: 62  QKGNPFGFGKHNSSQLNGGPHSENKPNQYKPFENKWNRQSSKPQQNG-----VKSENNPK 116

Query: 108 QAVNHKCTDPESCKREIIEDFE 129
           Q+ +H   D     + I+   E
Sbjct: 117 QSEHHIIMDILYHSQNILHLIE 138