Jatropha Genome Database

JcCB0031871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.20 + phase: 0 /pseudo
         (206 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g36290.1                                                        65   6e-11
Glyma11g09140.1                                                        61   7e-10

>Glyma01g36290.1 
          Length = 224

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 1   MADLSITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVKS 60
           M   SI++ RYTY+HD K+PSE +D+HH+V R+S  K  FV+ SA ++L  AL L+++K 
Sbjct: 42  MVIFSISNARYTYVHDQKYPSEDVDIHHVVSRRSNAKYLFVHASALLVLACALYLYVLKE 101


>Glyma11g09140.1 
          Length = 182

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 8/78 (10%)

Query: 1  MADLSITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVK- 59
          M   SI++ RYTY+HD K+PS+ +D+HHIV R+S  K + VY +A ++L  AL L+++K 
Sbjct: 1  MVIFSISNARYTYVHDQKYPSKDVDIHHIVSRRSNAK-YLVYATALLVLACALYLYVLKG 59

Query: 60 ---SFV---TLTDIMMIK 71
             SFV    L DI ++K
Sbjct: 60 KSISFVYYSLLFDIFLVK 77