Jatropha Genome Database

JcCB0031871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.10 - phase: 0 /partial
         (80 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g32030.1                                                        91   3e-19
Glyma14g14360.1                                                        91   3e-19

>Glyma17g32030.1 
          Length = 345

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 56/77 (72%), Gaps = 9/77 (11%)

Query: 3  SNSSNNPILPVXXXXXXXXXXXXRLIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLVMF 62
          SNSS N +LPV                  D+KLF+GSAMTKRGA+AA+SYMSCAVLLVMF
Sbjct: 6  SNSSENLMLPVSDPPKS---------HDADDKLFKGSAMTKRGAFAAVSYMSCAVLLVMF 56

Query: 63 NKAALSSYKFPSANVMS 79
          NKAALSSY FPSANV++
Sbjct: 57 NKAALSSYNFPSANVIT 73


>Glyma14g14360.1 
          Length = 345

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 56/77 (72%), Gaps = 9/77 (11%)

Query: 3  SNSSNNPILPVXXXXXXXXXXXXRLIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLVMF 62
          SNSS N +LPV               +  D KLF+GSAMTKRGA+AA+SYMSCAVLLVMF
Sbjct: 6  SNSSENLMLPVSDPPKT---------QDADNKLFKGSAMTKRGAFAAVSYMSCAVLLVMF 56

Query: 63 NKAALSSYKFPSANVMS 79
          NKAALSSY FPSANV++
Sbjct: 57 NKAALSSYNFPSANVIT 73