Jatropha Genome Database

JcCB0028581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028581.10 + phase: 2 /pseudo/partial
         (323 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g45690.1                                                       172   3e-43
Glyma04g11350.1                                                       103   2e-22
Glyma01g23070.1                                                       103   4e-22
Glyma13g02500.1                                                        85   1e-16
Glyma03g24070.1                                                        72   8e-13
Glyma08g26680.1                                                        61   2e-09
Glyma20g01870.1                                                        59   5e-09

>Glyma01g45690.1 
          Length = 732

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 147/229 (64%), Gaps = 18/229 (7%)

Query: 107 LFSLILPREDKVRLAKAEEKLIEDVRMLQQDVSSLRASLQ------------------RI 148
           + S++  REDK+ L+K EEKL  DV++ QQ+VS+ RASLQ                  RI
Sbjct: 499 MSSILKSREDKLTLSKKEEKLSGDVKLFQQEVSAARASLQELSSRKSSIQQDIASFKQRI 558

Query: 149 FFIDKRVPELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDLERTTAELEKLEED 208
            FIDKRVPELE+EKKVA + RNFKEAARIA EAKSL VEK+ +QI+++  T  LEKLEE+
Sbjct: 559 VFIDKRVPELEAEKKVATTARNFKEAARIATEAKSLCVEKESIQINMDMATLNLEKLEEE 618

Query: 209 MKNTVSRLLDTEHLISSKEKEVAMARFQRLLLIAGAATAERVSALELGDSXXXXXXXXXX 268
           + +T+++L +TE +I  KEKE+AM R+Q+LLL A  A AE+ +A+E+GD           
Sbjct: 619 INDTLNKLQETEGMILLKEKELAMVRYQKLLLAAATARAEKAAAVEMGDVEEANLLLAEA 678

Query: 269 XXXXXXXXXXQPIYNFNKEQFPNLPKHFISMELVFNLGRKQLADLAASV 317
                     +  Y F  E F +L +H ISM+LV +L +KQL +LA S+
Sbjct: 679 EAADCDAEKLKSTYKFEAEDFTDLQRHLISMDLVSHLDQKQLEELAVSL 727


>Glyma04g11350.1 
          Length = 205

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 16/103 (15%)

Query: 109 SLILPREDKVRLAKAEEKLIEDVRMLQQDVSSLRASLQ----------------RIFFID 152
           S++  +EDK+ LAK EEKL  DV++ Q+DVS+ RASLQ                RI FID
Sbjct: 102 SILKSKEDKLTLAKNEEKLSGDVKLFQRDVSAARASLQELSSRNIQQGIASFKQRIIFID 161

Query: 153 KRVPELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDL 195
           KRV ELE+EKKV+ + RNFK+AARIA EAKSL VEK+ +QID+
Sbjct: 162 KRVSELETEKKVSTAARNFKKAARIATEAKSLCVEKESIQIDM 204


>Glyma01g23070.1 
          Length = 347

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/119 (52%), Positives = 74/119 (62%), Gaps = 18/119 (15%)

Query: 109 SLILPREDKVRLAKAEEKLIEDVRMLQQDVSSLRASLQ------------------RIFF 150
           S +  REDK+ LAK  EKL  DV++ QQ+VS+ RASLQ                  RI F
Sbjct: 227 STLTSREDKLTLAKNNEKLSGDVKLFQQEVSATRASLQELSSRKSSIQQGIVSFKRRIIF 286

Query: 151 IDKRVPELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDLERTTAELEKLEEDM 209
           IDKRV ELE+EKKV  + RNFKE  RIA EAKSL VEK+ +QID + TT  LE L E +
Sbjct: 287 IDKRVLELEAEKKVVTAARNFKEIPRIATEAKSLCVEKESIQIDRDTTTLNLELLREKL 345


>Glyma13g02500.1 
          Length = 230

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 53/66 (80%), Gaps = 3/66 (4%)

Query: 134 LQQDVSSLRASLQRIFFIDKRVPELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQI 193
           +QQ +SS +   QRI FIDKR+ EL++EKKVA +TRNFKEAARIA +AKSL VEK+ +QI
Sbjct: 168 IQQAISSFK---QRIIFIDKRILELKAEKKVATATRNFKEAARIATKAKSLCVEKESIQI 224

Query: 194 DLERTT 199
           D+  TT
Sbjct: 225 DMNTTT 230


>Glyma03g24070.1 
          Length = 250

 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 42/197 (21%)

Query: 13  LQLARMPSGGEEQLLRISIQPLPSTGTSNYSWRLPVKPKISRPPKGLATGLPPL-TRRGK 71
           L+L  +  G  EQLL + ++   +  T+N S    V+ KI++   G       +  + GK
Sbjct: 62  LELNNVLMGELEQLLTL-VKQKETKITNNDSNSEVVENKINKIVSGFKEMQSSIDVKYGK 120

Query: 72  LFSLLLETLKPIVMPSILRCTMFXTLR---FLLSKNAQLF------------SLILPRED 116
           L  +L + L       IL   M   LR   ++ +K A+ +            S++  RE 
Sbjct: 121 LQFVLAQFL-------ILEEEMRARLREFAWIYTKEAKGYHKIVKLRRSLMSSILKSREG 173

Query: 117 KVRLAKAEEKLIEDVRMLQQDVSSLRASLQ------------------RIFFIDKRVPEL 158
           K+ LAK EEKL  DV++ Q +VS+ R SLQ                   I FIDKRVPEL
Sbjct: 174 KLTLAKNEEKLSGDVKLFQHEVSTARVSLQELSSRKSSIQQGITSFKQNIIFIDKRVPEL 233

Query: 159 ESEKKVAASTRNFKEAA 175
           E+EKK A + RNFKEAA
Sbjct: 234 EAEKKDATAARNFKEAA 250


>Glyma08g26680.1 
          Length = 48

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 39/50 (78%), Gaps = 3/50 (6%)

Query: 134 LQQDVSSLRASLQRIFFIDKRVPELESEKKVAASTRNFKEAARIAAEAKS 183
           +QQ ++S +   QR+ FIDKRVP+LE+E +VA + RNFKEA RIA EAKS
Sbjct: 1   IQQGITSFK---QRVIFIDKRVPKLEAEMEVATAARNFKEATRIAIEAKS 47


>Glyma20g01870.1 
          Length = 120

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query: 160 SEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDLERTTAELEKLEEDM 209
           S KKVA + RNFKEAARIA +A SL VEK+ +QID++ TT  LE L E +
Sbjct: 69  SSKKVATAARNFKEAARIATKANSLCVEKESIQIDMDMTTLNLELLREKL 118