Jatropha Genome Database
- JcCB0028471.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0028471.20 + phase: 0 /partial
(54 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma20g37260.2 87 3e-18
Glyma20g37260.1 87 3e-18
Glyma10g30150.1 80 4e-16
Glyma03g40500.1 79 9e-16
Glyma19g43160.1 76 8e-15
Glyma14g40510.1 72 2e-13
Glyma17g37650.1 67 3e-12
Glyma11g18390.1 48 2e-06
>Glyma20g37260.2
Length = 931
Score = 87.4 bits (215), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
MGVPAFYRWLADRYPL+I DVVEE+P +GV PID S+PNPNG+EFDN
Sbjct: 1 MGVPAFYRWLADRYPLSIADVVEEDPAVGDDGVPFPIDASKPNPNGMEFDN 51
>Glyma20g37260.1
Length = 932
Score = 87.4 bits (215), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
MGVPAFYRWLADRYPL+I DVVEE+P +GV PID S+PNPNG+EFDN
Sbjct: 1 MGVPAFYRWLADRYPLSIADVVEEDPAVGDDGVPFPIDASKPNPNGMEFDN 51
>Glyma10g30150.1
Length = 344
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
MGVPAFYRWLADRYPL+I D VE +P +GV +PID S+PNPNG+EFDN
Sbjct: 1 MGVPAFYRWLADRYPLSIADAVEVDPSVAEDGVPLPIDASKPNPNGMEFDN 51
>Glyma03g40500.1
Length = 966
Score = 79.3 bits (194), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 41/51 (80%), Gaps = 4/51 (7%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
MGVPAFYRWLADRYPL+I DVVEEEP + V DVS+PNPNG+EFDN
Sbjct: 1 MGVPAFYRWLADRYPLSIADVVEEEPSVGSGAV----DVSKPNPNGMEFDN 47
>Glyma19g43160.1
Length = 957
Score = 76.3 bits (186), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/51 (68%), Positives = 41/51 (80%), Gaps = 6/51 (11%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
MGVPAFYRWLADRYPL+I DVVEE+P A +DVS+PNP+G+EFDN
Sbjct: 1 MGVPAFYRWLADRYPLSITDVVEEDPSAGA------VDVSKPNPSGMEFDN 45
>Glyma14g40510.1
Length = 1075
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
MGVPAFYRWLA++YP+ IVD +EEEP +GV IP+D S+ NPN +E+DN
Sbjct: 1 MGVPAFYRWLAEKYPMVIVDAIEEEPVV-IDGVQIPVDTSKKNPNNIEYDN 50
>Glyma17g37650.1
Length = 1039
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
MGVPAFYRWLA++YP+ IVD +EEE +GV IP+D S NPN +E+DN
Sbjct: 1 MGVPAFYRWLAEKYPMVIVDAIEEEAVV-IDGVQIPVDTSNKNPNNIEYDN 50
>Glyma11g18390.1
Length = 755
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 1 MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGV 33
MGVP+FYRWL ++YP + DVV+ +ED NGV
Sbjct: 1 MGVPSFYRWLVNKYPKVVQDVVDPTMQEDPNGV 33