Jatropha Genome Database

JcCB0028271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028271.10 - phase: 0 /pseudo/partial
         (177 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g39780.1                                                       151   4e-37
Glyma03g42570.1                                                       108   3e-24
Glyma04g43680.1                                                       103   1e-22
Glyma12g00200.1                                                       100   1e-21
Glyma13g43620.1                                                        78   4e-15
Glyma02g48220.1                                                        69   3e-12
Glyma07g00710.1                                                        54   6e-08

>Glyma14g39780.1 
          Length = 1106

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 97/128 (75%), Gaps = 8/128 (6%)

Query: 19  VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
           VYHIGG+QVEFPYQPYG+Q AFMGRVISTL+RAQ+EGHCHALLESPTGTGKSLSLLCS+L
Sbjct: 8   VYHIGGLQVEFPYQPYGSQFAFMGRVISTLNRAQKEGHCHALLESPTGTGKSLSLLCSSL 67

Query: 79  AWQQNYKFKYQHANLTPSKPNPEAMTDPLGHGGGFIPETQPSSIPPSGNVDPPQTTGANK 138
           AWQ +YK ++ H      K   EA  DPL +GGGF+P+  P S   S ++D  Q+ G NK
Sbjct: 68  AWQHHYKSQHHHL-----KSAHEATADPLAYGGGFVPDEVPLS---SESLDRTQSEGNNK 119

Query: 139 GPKKNAAP 146
             KK  AP
Sbjct: 120 KQKKKEAP 127


>Glyma03g42570.1 
          Length = 267

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 71/90 (78%), Gaps = 5/90 (5%)

Query: 19  VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
           VY IGG+Q+EFPY+ YG+Q AFM RVISTL+  Q+EGHCHALLESP+GTGKSLSLLCS+L
Sbjct: 12  VYLIGGLQLEFPYERYGSQFAFMARVISTLNLTQKEGHCHALLESPSGTGKSLSLLCSSL 71

Query: 79  AWQQNYKFKYQHANLTPSKPNPEAMTDPLG 108
           AWQ +YK ++ H      KP  EA TDPL 
Sbjct: 72  AWQHHYKSQHHHL-----KPASEATTDPLA 96


>Glyma04g43680.1 
          Length = 400

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/128 (50%), Positives = 78/128 (60%), Gaps = 13/128 (10%)

Query: 19  VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
           VY +GG+QVEFPYQPYG+Q AFM RVISTL+  Q+EGHCHALL+SP+GTGKSLSLLCS+L
Sbjct: 17  VYLVGGLQVEFPYQPYGSQFAFMARVISTLNLVQKEGHCHALLKSPSGTGKSLSLLCSSL 76

Query: 79  AWQQNYKFKYQHANLTPSKPNPEAMTDPLGHGGGFIPETQPSSIPPSGNVDPPQTTGANK 138
           AWQ        H NL  +  +P     P+      I     S IP    ++       NK
Sbjct: 77  AWQ-------HHLNLNMTISSPRRRQPPILWLWWRICSRGVSEIPDHTQIE------INK 123

Query: 139 GPKKNAAP 146
             KK  AP
Sbjct: 124 KQKKKEAP 131


>Glyma12g00200.1 
          Length = 316

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 65/81 (80%)

Query: 19 VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
          VY IGG+QVEFPYQPYG+Q AFM RVISTL+ AQ+EGHCH LLESP+GTGKSLSLLCS+L
Sbjct: 12 VYLIGGLQVEFPYQPYGSQFAFMARVISTLNLAQKEGHCHTLLESPSGTGKSLSLLCSSL 71

Query: 79 AWQQNYKFKYQHANLTPSKPN 99
          AWQ +       ++L   +P+
Sbjct: 72 AWQHHLNLNITISSLRRRQPS 92


>Glyma13g43620.1 
          Length = 1007

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 5/64 (7%)

Query: 20 YHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLA 79
          Y I GI V+FPY+ Y +QL +M +VI +L     +  C+ALLESPTGTGK+L LLC+TLA
Sbjct: 26 YKIRGIDVDFPYEAYESQLVYMDKVIQSL-----QEKCNALLESPTGTGKTLCLLCATLA 80

Query: 80 WQQN 83
          W+++
Sbjct: 81 WRKS 84


>Glyma02g48220.1 
          Length = 81

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 49/68 (72%), Gaps = 5/68 (7%)

Query: 48  LDRAQREGHCHALLESPTGTGKSLSLLCSTLAWQQNYKFKYQHANLTPSKPNPEAMTDPL 107
           L+ AQ+EGHC  LLESPTGT KSLSLLCS+LAWQ +YK +  H      KP  EA TDPL
Sbjct: 18  LNLAQKEGHCRTLLESPTGTAKSLSLLCSSLAWQHHYKSQQHHL-----KPVSEATTDPL 72

Query: 108 GHGGGFIP 115
            HGG F+P
Sbjct: 73  AHGGRFVP 80


>Glyma07g00710.1 
          Length = 897

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 5/63 (7%)

Query: 29 FPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLAWQQNYKFKY 88
          FP++PY  Q+ FM  +  +L++        ++LESPTGTGK++S++CS L W  + + + 
Sbjct: 13 FPFEPYSIQIDFMNSLYESLNQGGV-----SMLESPTGTGKTMSVICSALQWVLDRRLQQ 67

Query: 89 QHA 91
            A
Sbjct: 68 DEA 70