Jatropha Genome Database

JcCB0027461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027461.10 - phase: 0 /partial
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g42370.1                                                        86   6e-18
Glyma06g12430.2                                                        86   1e-17
Glyma06g12430.1                                                        86   1e-17

>Glyma04g42370.1 
          Length = 600

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 44/55 (80%)

Query: 1   VKVGGSVQNKGWIIESVDYKDTSVPEEIRIRGFRIKKIEQLEKHYSEPGKFDLKA 55
           V V GSVQN GW++E+VDYKD S PE +RIRGF+  KIEQLE  YSEPGKF LKA
Sbjct: 546 VNVSGSVQNNGWVLETVDYKDASEPEVLRIRGFKFNKIEQLETKYSEPGKFHLKA 600


>Glyma06g12430.2 
          Length = 600

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 44/55 (80%)

Query: 1   VKVGGSVQNKGWIIESVDYKDTSVPEEIRIRGFRIKKIEQLEKHYSEPGKFDLKA 55
           V V GSVQN GWI+E++DYKD S PE +RIRGF+  KIEQLE  YSEPGKF LKA
Sbjct: 546 VNVSGSVQNDGWILETIDYKDASEPEVLRIRGFKFNKIEQLETKYSEPGKFHLKA 600


>Glyma06g12430.1 
          Length = 600

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 44/55 (80%)

Query: 1   VKVGGSVQNKGWIIESVDYKDTSVPEEIRIRGFRIKKIEQLEKHYSEPGKFDLKA 55
           V V GSVQN GWI+E++DYKD S PE +RIRGF+  KIEQLE  YSEPGKF LKA
Sbjct: 546 VNVSGSVQNDGWILETIDYKDASEPEVLRIRGFKFNKIEQLETKYSEPGKFHLKA 600