Jatropha Genome Database

JcCB0027191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027191.20 - phase: 0 /short
         (43 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g11030.1                                                        83   8e-17
Glyma01g22170.1                                                        80   6e-16
Glyma02g11030.2                                                        79   8e-16
Glyma01g39200.1                                                        57   3e-09
Glyma01g33520.1                                                        55   2e-08
Glyma11g06060.1                                                        54   3e-08
Glyma03g03350.1                                                        52   1e-07

>Glyma02g11030.1 
          Length = 366

 Score = 82.8 bits (203), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query: 1   MGSTECLTWPDNWTTLTADGSPAAQFEHTILITRTGAEILT 41
           MGS + +TWPDNWTTLTADGSPAAQFEHTILIT+TGAEILT
Sbjct: 324 MGSIDSITWPDNWTTLTADGSPAAQFEHTILITKTGAEILT 364


>Glyma01g22170.1 
          Length = 201

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 40/42 (95%)

Query: 1   MGSTECLTWPDNWTTLTADGSPAAQFEHTILITRTGAEILTK 42
           MGS + +TWPDNWTT+TADGSPAAQFEHTILIT+TGAEILTK
Sbjct: 159 MGSIDSITWPDNWTTITADGSPAAQFEHTILITKTGAEILTK 200


>Glyma02g11030.2 
          Length = 352

 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query: 1   MGSTECLTWPDNWTTLTADGSPAAQFEHTILITRTGAEILT 41
           MGS + +TWPDNWTTLTADGSPAAQFEHTILIT+TGAEILT
Sbjct: 310 MGSIDSITWPDNWTTLTADGSPAAQFEHTILITKTGAEILT 350


>Glyma01g39200.1 
          Length = 356

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 1   MGSTECLTWPDNWTTLTADGSPAAQFEHTILITRTGAEILTK 42
           +GS   + W D+WT +T DGS +AQFEHTILIT  GAEI+T+
Sbjct: 314 IGSINPVMWNDDWTVVTEDGSLSAQFEHTILITPDGAEIMTQ 355


>Glyma01g33520.1 
          Length = 397

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 9   WPDNWTTLTADGSPAAQFEHTILITRTGAEILT 41
           WPD WT +TADG  +AQFEHT+L+T TG E+LT
Sbjct: 350 WPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 382


>Glyma11g06060.1 
          Length = 93

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 1  MGSTECLTWPDNWTTLTADGSPAAQFEHTILITRTGAEILTK 42
          +GS   + W D+WT +T DGS +AQFEHTILIT  GAEI+T+
Sbjct: 51 IGSINPVMWNDDWTVVTEDGSLSAQFEHTILITPDGAEIMTE 92


>Glyma03g03350.1 
          Length = 356

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 26/33 (78%)

Query: 9   WPDNWTTLTADGSPAAQFEHTILITRTGAEILT 41
           WPD WT +TADG  +AQFE T+L+T TG E+LT
Sbjct: 309 WPDGWTAVTADGKRSAQFEQTLLVTETGVEVLT 341