Jatropha Genome Database

JcCB0027171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027171.10 + phase: 0 /partial
         (172 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g00510.1                                                       143   1e-34

>Glyma04g00510.1 
          Length = 409

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 110/181 (60%), Gaps = 10/181 (5%)

Query: 1   SLCYFRRQGIYCRYHKSKASEVYSTTRTELRGGNLKTAFRDT--LKSQGIYLVDPLSDKT 58
           +L   +R G YC+YHKSKASE YS+ RTEL+GGNL+TAFR    LKS+GIYLVDPL+DKT
Sbjct: 230 TLVINKRHGTYCKYHKSKASEKYSSMRTELKGGNLRTAFRPMGYLKSEGIYLVDPLADKT 289

Query: 59  NINKPVQPLKLLSVEGLKKALSNADKVTTNTFSQGIRFLNEITGLILLTLVVD------- 111
           N+ K  QP+KLLSV+G++KALSNA KVTT + SQGIRFL+E+       +          
Sbjct: 290 NLKK-SQPVKLLSVDGIRKALSNAGKVTTASHSQGIRFLSEVAAKSDPKMKNKGSKFPNV 348

Query: 112 TNSSSGAMKLSTMKVDPSILXXXXXXXXXXXTDQGQVSAEKAKHGKGKMIELDIYGSDEE 171
            N  +   K S   V  S +              GQV A+K      KMIE+D+  SDE+
Sbjct: 349 QNKWTEKRKSSFPNVGSSPVIGNRQSGEKRIKPDGQVLADKTLKRIEKMIEIDLVSSDED 408

Query: 172 I 172
            
Sbjct: 409 F 409