Jatropha Genome Database

JcCB0025091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025091.20 + phase: 0 
         (95 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g29080.2                                                       147   3e-36
Glyma03g29080.1                                                       141   2e-34
Glyma19g31890.3                                                        64   4e-11
Glyma19g31890.2                                                        64   4e-11
Glyma19g31890.1                                                        64   4e-11

>Glyma03g29080.2 
          Length = 94

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 84/94 (89%), Gaps = 1/94 (1%)

Query: 1  MGSMLGDWPSFDPQNFSQLRPTDPANPSKMTPATYHPTHSRTLPPPDQVISTEAKNILLR 60
          M S++G+WPS+DP NFSQLRP+DP++ SKM PATYHPTH+RTLP PDQVISTEAKNIL+R
Sbjct: 1  MDSLIGNWPSYDPHNFSQLRPSDPSSSSKMMPATYHPTHNRTLPAPDQVISTEAKNILMR 60

Query: 61 NFYERAEERLRPKRAASES-LIPEHGCKQPRAST 93
          + Y+ +E++L PKRAAS++ L+PEHGCKQPR S+
Sbjct: 61 HIYQHSEQKLNPKRAASDNLLLPEHGCKQPRVSS 94


>Glyma03g29080.1 
          Length = 97

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 84/97 (86%), Gaps = 4/97 (4%)

Query: 1  MGSMLGDWPSFDPQNFSQLRPTDPANPSKMTPATYHPTHSRTLPPPDQ---VISTEAKNI 57
          M S++G+WPS+DP NFSQLRP+DP++ SKM PATYHPTH+RTLP PDQ   VISTEAKNI
Sbjct: 1  MDSLIGNWPSYDPHNFSQLRPSDPSSSSKMMPATYHPTHNRTLPAPDQVPTVISTEAKNI 60

Query: 58 LLRNFYERAEERLRPKRAASES-LIPEHGCKQPRAST 93
          L+R+ Y+ +E++L PKRAAS++ L+PEHGCKQPR S+
Sbjct: 61 LMRHIYQHSEQKLNPKRAASDNLLLPEHGCKQPRVSS 97


>Glyma19g31890.3 
          Length = 61

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query: 1  MGSMLGDWPSFDPQNFSQLRPTDPANPSKMTPATYHPTHSRTLPPPDQVISTEAKNI 57
          M S+LG+WPSFDP NFSQLRP+DP++ S+MT  TYHPTHSRTLP PDQ  +T    I
Sbjct: 1  MDSLLGNWPSFDPHNFSQLRPSDPSSSSRMTLPTYHPTHSRTLPAPDQGNTTNFLMI 57


>Glyma19g31890.2 
          Length = 61

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query: 1  MGSMLGDWPSFDPQNFSQLRPTDPANPSKMTPATYHPTHSRTLPPPDQVISTEAKNI 57
          M S+LG+WPSFDP NFSQLRP+DP++ S+MT  TYHPTHSRTLP PDQ  +T    I
Sbjct: 1  MDSLLGNWPSFDPHNFSQLRPSDPSSSSRMTLPTYHPTHSRTLPAPDQGNTTNFLMI 57


>Glyma19g31890.1 
          Length = 61

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query: 1  MGSMLGDWPSFDPQNFSQLRPTDPANPSKMTPATYHPTHSRTLPPPDQVISTEAKNI 57
          M S+LG+WPSFDP NFSQLRP+DP++ S+MT  TYHPTHSRTLP PDQ  +T    I
Sbjct: 1  MDSLLGNWPSFDPHNFSQLRPSDPSSSSRMTLPTYHPTHSRTLPAPDQGNTTNFLMI 57