Jatropha Genome Database

JcCB0025091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025091.10 - phase: 0 
         (148 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g02140.1                                                       197   3e-51
Glyma05g37400.1                                                       194   2e-50

>Glyma08g02140.1 
          Length = 361

 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/143 (68%), Positives = 108/143 (75%), Gaps = 4/143 (2%)

Query: 1   MAAPEAPVCYVGVARASPAFRLMKQMGWEEGEGLGKDKQGIKGYVRVKNKQDTTGVGVEK 60
           MAAPE+P+CYVGVAR S AFRLMKQMGWEEGEGLGK+KQGIKG+VRVKNKQDT G+G+EK
Sbjct: 1   MAAPESPLCYVGVARQSAAFRLMKQMGWEEGEGLGKEKQGIKGHVRVKNKQDTIGIGLEK 60

Query: 61  PSNWAFDTTQFDSILKRLKVQAAHXXXXXXXXXXXXXXXXXXXSTGLQEPVVKATRPQGR 120
           P+NWAFDTTQFD+ILKRLKVQA                         ++ V K TRPQGR
Sbjct: 61  PNNWAFDTTQFDNILKRLKVQAPQSHDIEEKVETKASVPVDNE----EDSVPKTTRPQGR 116

Query: 121 YKRRERGKLVQSYSSKDLEGILV 143
           Y RRERGKLV  YS KDLEGILV
Sbjct: 117 YARRERGKLVSQYSLKDLEGILV 139


>Glyma05g37400.1 
          Length = 362

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 106/143 (74%), Gaps = 3/143 (2%)

Query: 1   MAAPEAPVCYVGVARASPAFRLMKQMGWEEGEGLGKDKQGIKGYVRVKNKQDTTGVGVEK 60
           MAAPE P+CYVGVAR S AFRLMKQMGWEEGEGLGK+KQGIKG+VRVK+K DT G+G+EK
Sbjct: 1   MAAPETPLCYVGVARQSAAFRLMKQMGWEEGEGLGKEKQGIKGHVRVKSKHDTIGIGLEK 60

Query: 61  PSNWAFDTTQFDSILKRLKVQAAHXXXXXXXXXXXXXXXXXXXSTGLQEPVVKATRPQGR 120
           P+NWAFDTTQFD+ILKRLKVQA                       G +  V K TRPQGR
Sbjct: 61  PNNWAFDTTQFDNILKRLKVQAPQ---SHDTDIEEKVETKPSVPVGNEHSVSKTTRPQGR 117

Query: 121 YKRRERGKLVQSYSSKDLEGILV 143
           Y RRERGKLV  YS KDLEGILV
Sbjct: 118 YTRRERGKLVSQYSLKDLEGILV 140