Jatropha Genome Database

JcCB0022491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022491.10 - phase: 0 /pseudo
         (311 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g36560.1                                                        88   1e-17
Glyma20g31040.1                                                        87   3e-17
Glyma15g00620.1                                                        69   6e-12
Glyma08g23230.1                                                        62   9e-10
Glyma07g02760.1                                                        52   9e-07
Glyma07g03030.1                                                        52   9e-07
Glyma07g02800.1                                                        52   1e-06

>Glyma10g36560.1 
          Length = 290

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 44/58 (75%)

Query: 254 MNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVKLREDEADPPRQVRSFRR 311
           MNPVRTLGPAVAAGNYK IWIYLVAP             VKLR++EA+PPRQVRSFRR
Sbjct: 233 MNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGAGVYTLVKLRDEEAEPPRQVRSFRR 290


>Glyma20g31040.1 
          Length = 263

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 44/58 (75%)

Query: 254 MNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVKLREDEADPPRQVRSFRR 311
           MNPVRTLGPAVAAGNYK IWIYLVAP             VKLR++EA+PPRQVRSFRR
Sbjct: 206 MNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGAGVYTLVKLRDNEAEPPRQVRSFRR 263



 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 12/61 (19%)

Query: 24 LFSSLRVDSLSYDRKS--MPRCKCLPVNAPSWGQTHTCFTDF----PAPDVSLTRKMDIN 77
          LF+SLRVDSLS++R S  M RCKCLP       + H CFTDF    P P+VSLT+K+   
Sbjct: 25 LFTSLRVDSLSHERDSFAMARCKCLPT------KGHICFTDFSVGVPLPNVSLTQKVGAE 78

Query: 78 F 78
          F
Sbjct: 79 F 79


>Glyma15g00620.1 
          Length = 304

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 254 MNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVKLRE--DEADPPRQVRSFRR 311
           MNPVRTLGPAVAA NYKAIW+YLVAPI            VKL E  D+A     + SFRR
Sbjct: 245 MNPVRTLGPAVAANNYKAIWVYLVAPILGALAGAGTYTAVKLPEEDDDAKAKTSISSFRR 304


>Glyma08g23230.1 
          Length = 306

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 254 MNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVKLREDEA-DPPRQV--RSFR 310
           MNPVRTLGPA+AA NYK IW+YL+API            VKL E+EA   P      SFR
Sbjct: 246 MNPVRTLGPAIAANNYKGIWVYLIAPILGTLCGAGAYTVVKLPEEEATKTPSSAPNGSFR 305

Query: 311 R 311
           R
Sbjct: 306 R 306


>Glyma07g02760.1 
          Length = 181

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 233 CGRVGRNCSWSNCCAKHSCCG--MNPVRTLGPAVAAGNYKAIWIYLVAPI 280
            G V       N     +  G  MNP RTLGPA+AA NYK IWIYL API
Sbjct: 107 AGIVVGATVMINILMAGAATGSSMNPARTLGPAIAAHNYKGIWIYLTAPI 156


>Glyma07g03030.1 
          Length = 248

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 23/27 (85%)

Query: 254 MNPVRTLGPAVAAGNYKAIWIYLVAPI 280
           MNP RTLGPA+AA NYK IWIYL API
Sbjct: 200 MNPARTLGPAIAAHNYKGIWIYLTAPI 226


>Glyma07g02800.1 
          Length = 184

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 244 NCCAKHSCCG--MNPVRTLGPAVAAGNYKAIWIYLVAPI 280
           N     +  G  MNP RTLGPA+AA NYK IWIYL API
Sbjct: 121 NILMAGAATGSSMNPARTLGPAIAAHNYKGIWIYLTAPI 159