Jatropha Genome Database

JcCB0018541.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.30 + phase: 0 /short
         (46 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g41710.1                                                        82   1e-16
Glyma19g44330.1                                                        80   5e-16
Glyma07g06350.1                                                        75   1e-14
Glyma16g02990.1                                                        70   3e-13

>Glyma03g41710.1 
          Length = 801

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 41/47 (87%), Gaps = 1/47 (2%)

Query: 1  MADST-KVRLVRCPKCENLLPELADYSVYQCGGCGAVLRGTFLLKFL 46
          M+DS  K+RLVRCPKC+NLLPELADYSVYQCGGCGAVLRG  L+  +
Sbjct: 1  MSDSANKLRLVRCPKCQNLLPELADYSVYQCGGCGAVLRGNDLVHLI 47


>Glyma19g44330.1 
          Length = 804

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/40 (87%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1  MADST-KVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          M+DS  KVRLVRCPKC+NLLPELADYSVYQCGGCGAVLR 
Sbjct: 1  MSDSANKVRLVRCPKCQNLLPELADYSVYQCGGCGAVLRA 40


>Glyma07g06350.1 
          Length = 847

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 1  MADSTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          M DSTK+RLVRCPKC+N+LPELA+Y++YQCG C  VLRG
Sbjct: 1  MEDSTKLRLVRCPKCQNVLPELANYTIYQCGACNTVLRG 39


>Glyma16g02990.1 
          Length = 874

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 1  MADSTKVRLVRCPKCENLLPELADYSVYQCGGC 33
          M DSTK+RLVRCPKC+N+LPELA+Y+VYQCGGC
Sbjct: 1  MEDSTKLRLVRCPKCQNVLPELANYTVYQCGGC 33