Jatropha Genome Database

JcCB0018541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.20 + phase: 0 
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g03000.1                                                        59   2e-09
Glyma19g44320.1                                                        55   1e-08
Glyma07g06360.1                                                        55   2e-08

>Glyma16g03000.1 
          Length = 73

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 23 LAIWDLGSPLYDSYELVSVSYLIERHLMTLPSLGGGSRRLISR 65
          + IWD GSPLYDSYELVS+ ++I+RHLM  PS    S  +I+R
Sbjct: 1  MPIWDCGSPLYDSYELVSLDHIIDRHLMAFPSSHESSMSIITR 43


>Glyma19g44320.1 
          Length = 98

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 22 ALAIWDLGSPLYDSYELVSVSYLIERHLMTLPSLGG 57
          A+  WD GSPLYDSYELVS++Y I+RH+M  P LGG
Sbjct: 11 AVLKWDCGSPLYDSYELVSLAYTIDRHMMAWPHLGG 46


>Glyma07g06360.1 
          Length = 37

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 28/35 (80%)

Query: 25 IWDLGSPLYDSYELVSVSYLIERHLMTLPSLGGGS 59
          IWD GSPLYDSYELVSV ++I+RHLM  PS   GS
Sbjct: 1  IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGS 35