Jatropha Genome Database

JcCB0018351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018351.20 + phase: 0 /partial/short
         (49 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g06530.1                                                        91   3e-19
Glyma02g12470.1                                                        90   6e-19
Glyma07g35410.1                                                        75   1e-14
Glyma20g03510.1                                                        75   1e-14
Glyma08g26200.1                                                        69   1e-12
Glyma01g04630.1                                                        56   9e-09
Glyma02g02920.1                                                        56   9e-09
Glyma02g02920.2                                                        56   1e-08
Glyma18g49790.1                                                        51   3e-07

>Glyma01g06530.1 
          Length = 428

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 45/49 (91%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRDD 49
           KHGI +VGLTIQAQK EELPE+VLCC+RLNKIDFVNHGQIPT+VT  D+
Sbjct: 376 KHGILDVGLTIQAQKQEELPEEVLCCLRLNKIDFVNHGQIPTLVTLDDN 424


>Glyma02g12470.1 
          Length = 520

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 45/49 (91%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRDD 49
           KHGI +VGLTIQAQK EELPE+VLCC+RLNKIDFVNHGQIPT++T  D+
Sbjct: 468 KHGILDVGLTIQAQKQEELPEEVLCCLRLNKIDFVNHGQIPTLMTLDDN 516


>Glyma07g35410.1 
          Length = 378

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 39/44 (88%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIV 44
           K+ + N+GLTIQAQK EELPEQVLCC++LNKIDF N GQIPTIV
Sbjct: 317 KNVVLNLGLTIQAQKQEELPEQVLCCLQLNKIDFANDGQIPTIV 360


>Glyma20g03510.1 
          Length = 294

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 41/49 (83%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRDD 49
           K+ + N+G+TIQAQK EELPE VLCC+RLNKIDF N+GQIPTIV   D+
Sbjct: 246 KNVVLNMGITIQAQKQEELPEHVLCCLRLNKIDFANNGQIPTIVALDDN 294


>Glyma08g26200.1 
          Length = 511

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/45 (66%), Positives = 39/45 (86%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVT 45
           K GI ++GLTIQAQK EELPE+VLCC+RLNKID  ++GQ+P ++T
Sbjct: 462 KDGILDLGLTIQAQKQEELPEKVLCCLRLNKIDLNDNGQMPMLMT 506


>Glyma01g04630.1 
          Length = 512

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 6   NVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           +VGLTIQ  K EELPE VLCC+RLN ID++N+ Q+
Sbjct: 471 DVGLTIQGNKQEELPEHVLCCIRLNGIDYMNYQQL 505


>Glyma02g02920.1 
          Length = 513

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 6   NVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           +VGLTIQ  K EELPE VLCC+RLN ID++N+ Q+
Sbjct: 472 DVGLTIQGNKQEELPENVLCCIRLNGIDYMNYQQL 506


>Glyma02g02920.2 
          Length = 512

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 6   NVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           +VGLTIQ  K EELPE VLCC+RLN ID++N+ Q+
Sbjct: 471 DVGLTIQGNKQEELPENVLCCIRLNGIDYMNYQQL 505


>Glyma18g49790.1 
          Length = 139

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 13  AQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVT 45
           A K EELPE+VLCC+RLNKID  ++GQ+P ++T
Sbjct: 104 AHKQEELPEKVLCCLRLNKIDLNDNGQMPMLMT 136