Jatropha Genome Database

JcCB0018201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018201.10 - phase: 0 /pseudo
         (349 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g11180.1                                                       199   5e-51

>Glyma02g11180.1 
          Length = 481

 Score =  199 bits (505), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 141/179 (78%), Gaps = 1/179 (0%)

Query: 171 STFSLAPNQLVEDYIKAFVHKWPVPAIVVPGGHPRMKYDAFNASTVALCTSGTVAVELQL 230
           +   +APN+ VE++I   VH+WPVP +++PGG  +++YDAF+AS  ALCTSGTVAVELQL
Sbjct: 300 TIIHVAPNEHVENFIADAVHRWPVPVVLIPGGTTQLRYDAFSASRAALCTSGTVAVELQL 359

Query: 231 ARLPCVVAYRAHLLTESFIQYKAKIPYISLPNILMDSAIIPEALFHACTPTNLASLLKEL 290
           ARLPCVVAYRAH+LTE +I YKAKI YISL NIL+D AIIPEALF +C P NLA LLK+L
Sbjct: 360 ARLPCVVAYRAHILTEWYIWYKAKIQYISLTNILLDKAIIPEALFQSCKPLNLALLLKDL 419

Query: 291 MHNKELQEKQIVAAEKVISLLFPSERIIYNSAEQVKERSFSSFSPSIMAASTILWHVKP 349
           +H+   +E+QI+AA+K++ LL+PSERI  N  +Q   ++ + ++PS +AA TIL H KP
Sbjct: 420 LHDDGCREEQIIAAQKILKLLWPSERIKLNLLQQ-NLKTCADYTPSAVAALTILNHGKP 477