Jatropha Genome Database

JcCB0017941.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017941.30 + phase: 0 
         (388 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g32910.1                                                       106   5e-23

>Glyma18g32910.1 
          Length = 429

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 126/254 (49%), Gaps = 16/254 (6%)

Query: 65  IAHEGLNELRYKLQIYRSGDYWVPTGGLKKEEMDIPPIVTILLVGFSSSGKSSLVNLMYS 124
           I  + L   + K+  Y+ G +    GGLK  + D+P    +LLVG   SGKSSL+N +  
Sbjct: 91  IHSKDLKREKQKILRYKPGAWIEKAGGLKISDYDVPKTTCLLLVGPRGSGKSSLINRISK 150

Query: 125 VLGRTGLVLFAQTKSGSGKKNYTTMFMEEHNVLRSIKSGFCVYDSRGF-NYDKVGEALEE 183
           V+           +S +      T F++E+ + R   S  C+YD+R   +  +  E +  
Sbjct: 151 VVEDDRFAPARAQESDNSLLGDGTSFLQEYMIPRYSNS-ICLYDTRSLSDNSEKDENIRM 209

Query: 184 LSSWMSDGVHHNQLCLRSGDHNVLLKDIDAEQ-----LSSRNSSKFIQRRVNCAMVVVNV 238
           L SWM+ GVHH +L +R  D+  L K +  +      LSS+       R+VN  + VVN 
Sbjct: 210 LKSWMTKGVHHGELVVRKTDNQRLRKSLKGKAHKKGYLSSKT------RKVNFVIYVVNG 263

Query: 239 AEVYKALK---AGDSKPLEATKELFCSSALRNCNENPILILTHGDLLTSEERIEGRLKIC 295
             V KA++   A +++ +++    F    L   ++ P+L+ THGDLL+  ER   R  + 
Sbjct: 264 LLVLKAMENDGALETQCVQSIVSTFNCPFLSFKDDKPVLVFTHGDLLSFSERALVREHLG 323

Query: 296 ESLGISETNGIYDV 309
             LGI  T  I+D+
Sbjct: 324 TLLGIPPTKQIFDI 337