Jatropha Genome Database

JcCB0016381.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016381.30 + phase: 0 
         (94 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g11820.1                                                       165   9e-42
Glyma14g03300.1                                                       119   5e-28
Glyma08g42140.1                                                       114   2e-26
Glyma18g12890.1                                                       113   5e-26
Glyma06g48200.1                                                       100   6e-22

>Glyma17g11820.1 
          Length = 1059

 Score =  165 bits (418), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 77/92 (83%), Positives = 87/92 (94%), Gaps = 1/92 (1%)

Query: 1  MAGNDWINSYLDAILDVDPGIDNAKLSLLLRERGRFSPTRYFVEEVITGFDETDLHRSWL 60
          MAGNDW+NSYL+AILDV PG+D+AK SLLLRERGRFSPTRYFVEEVI GFDETDL+RSW+
Sbjct: 1  MAGNDWLNSYLEAILDVGPGLDDAKSSLLLRERGRFSPTRYFVEEVI-GFDETDLYRSWV 59

Query: 61 RAAAMRSTQERNTRLENMCWRIWNLARKKKQV 92
          RA++ RS QERNTRLENMCWRIWNLAR+KKQ+
Sbjct: 60 RASSTRSPQERNTRLENMCWRIWNLARQKKQL 91


>Glyma14g03300.1 
          Length = 1063

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 73/96 (76%), Gaps = 4/96 (4%)

Query: 1  MAGNDWINSYLDAILDVDPGI----DNAKLSLLLRERGRFSPTRYFVEEVITGFDETDLH 56
          MAGN+WIN YL+AIL    G     +  + ++   E G F+PT+YFVEEV++  DE+DLH
Sbjct: 1  MAGNEWINGYLEAILSTGTGAGTVDEQMQKAVTPPESGHFNPTQYFVEEVVSSVDESDLH 60

Query: 57 RSWLRAAAMRSTQERNTRLENMCWRIWNLARKKKQV 92
          R+W++  A R+T+ER++RLENMCWRIW+LARKKKQ+
Sbjct: 61 RTWIKVVATRNTRERSSRLENMCWRIWHLARKKKQL 96


>Glyma08g42140.1 
          Length = 1055

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 70/94 (74%), Gaps = 2/94 (2%)

Query: 1  MAGNDWINSYLDAILDVDPGI--DNAKLSLLLRERGRFSPTRYFVEEVITGFDETDLHRS 58
          MAGN+WIN YL+AIL        +     + L++ G F+PT+YFVEEV+   DE+DL+R+
Sbjct: 1  MAGNEWINGYLEAILSTGASTIEEQKPAPVTLKDGGHFNPTKYFVEEVVASVDESDLYRT 60

Query: 59 WLRAAAMRSTQERNTRLENMCWRIWNLARKKKQV 92
          W++  A R+T+ER++RLENMCWRIW+L RKKKQ+
Sbjct: 61 WIKVVATRNTRERSSRLENMCWRIWHLTRKKKQL 94


>Glyma18g12890.1 
          Length = 1052

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 70/94 (74%), Gaps = 2/94 (2%)

Query: 1  MAGNDWINSYLDAILDVDPGI--DNAKLSLLLRERGRFSPTRYFVEEVITGFDETDLHRS 58
          MAGN+WI+ YL+AIL        +     + L++ G F+PT+YFVEEV+   DE+DL+R+
Sbjct: 1  MAGNEWIDGYLEAILSTGASTIEEQKPAPVTLKDGGHFNPTKYFVEEVVASVDESDLYRT 60

Query: 59 WLRAAAMRSTQERNTRLENMCWRIWNLARKKKQV 92
          W++  A R+T+ER++RLENMCWRIW+L RKKKQ+
Sbjct: 61 WIKVVATRNTRERSSRLENMCWRIWHLTRKKKQL 94


>Glyma06g48200.1 
          Length = 1037

 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 13/105 (12%)

Query: 2   AGNDWINSYLDAILDVDPGIDNAKLSLLL------------RERGRFSPT-RYFVEEVIT 48
           A N+W+N YL+AILDV   +   K    +            RE   F+PT +YFVEEV+ 
Sbjct: 3   AVNEWLNGYLEAILDVGSSVKEKKNDGKVKNFAKFEQEKHQREEKLFNPTTKYFVEEVVN 62

Query: 49  GFDETDLHRSWLRAAAMRSTQERNTRLENMCWRIWNLARKKKQVC 93
            F+E DL+R+W++  A R+T+ER+ RLENMCWRIW+L RKKKQ+ 
Sbjct: 63  SFNEHDLYRTWVKVTARRNTRERSNRLENMCWRIWHLTRKKKQIA 107