Jatropha Genome Database

JcCB0016381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016381.10 - phase: 0 
         (386 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g06940.1                                                       230   2e-60

>Glyma04g06940.1 
          Length = 300

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/274 (44%), Positives = 187/274 (68%), Gaps = 20/274 (7%)

Query: 67  LLFTLKTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQACIDKECVRNLVRII 126
           +L +L+TL  K+    GYS +SLL R +T YKI  +  A+E+++Q+ ID+  +R+LV  +
Sbjct: 1   MLSSLRTLIDKLHKHHGYSPRSLLHRYVTAYKISHLARAVESQIQSYIDRLNIRDLVDTL 60

Query: 127 QETESDSEEDKLRVLKGFEKRLSQGFDGDFQELVLRAKGFSLLESLICDSTRPMKIREQA 186
           Q+ +   ++ +++VL  F +RLSQGFD +FQ+LVLRAK F+LLE ++ +++   +++E+A
Sbjct: 61  QDQQQQQQQ-QVKVLVEFRQRLSQGFDLEFQDLVLRAKVFTLLECMLFENSSSERVKEEA 119

Query: 187 ALCVVGLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIRLIRTPLIDEIELEGE 246
           A+ +  LV+FN++VFVGLVLMGP +++L++ AS  S++VL SLIR IR+PL+DEI   GE
Sbjct: 120 AMTIAALVKFNKNVFVGLVLMGPTIKALIAMASGCSVRVLSSLIRFIRSPLVDEILCSGE 179

Query: 247 IPRIISLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIEKLMELQRSTCGDDLA 306
           IP+I+    S+DL ++VAA+DCV E+ Y GR+EV+EAM++ GL+E LM+LQR        
Sbjct: 180 IPKIVGFLRSRDLGLRVAALDCVLELGYIGRREVVEAMLKIGLVEILMDLQRE------- 232

Query: 307 ERDQFNGNVSNAEVCAEIVKKRPFASCVARFALQ 340
                       E C E      F  CV+RFA+Q
Sbjct: 233 ------------EGCCESDCDFAFECCVSRFAIQ 254