Jatropha Genome Database

JcCB0016371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016371.20 - phase: 0 
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g31110.1                                                        56   7e-09
Glyma15g12860.1                                                        56   7e-09
Glyma14g05610.1                                                        55   2e-08
Glyma09g01920.1                                                        55   2e-08
Glyma09g31110.2                                                        53   9e-08

>Glyma09g31110.1 
          Length = 224

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QKIVIK+ M+  K R+KALKI   V GV + +L  DD +++ V G  VD V L + L+
Sbjct: 1  MKQKIVIKLQMDCDKCRNKALKIAAEVRGVTTVSLEGDDNDRVAVSGVNVDMVCLANQLK 60

Query: 61 NKLG 64
           K  
Sbjct: 61 KKFS 64


>Glyma15g12860.1 
          Length = 70

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 7  IKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNKLGKK 66
          +KV MN  K R+KALK+V   SGV    L  ++K+++ VIG+ VD VKLT+ LR K+G  
Sbjct: 1  MKVHMNCQKCRTKALKVVAAASGVNFVGLEGEEKDKLVVIGDEVDPVKLTNSLRKKVGHT 60

Query: 67 DCLT 70
          D ++
Sbjct: 61 DIIS 64


>Glyma14g05610.1 
          Length = 127

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 3  QKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNK 62
          +KIVI+V M   K RSKALKI     GV S AL  + ++Q+ V G+ +D+V LT+  R K
Sbjct: 2  KKIVIQVHMENDKCRSKALKIAAASQGVHSVALEGESRDQVVVTGDTIDSVCLTNKFRKK 61

Query: 63 LG 64
            
Sbjct: 62 FS 63


>Glyma09g01920.1 
          Length = 77

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 51/70 (72%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QKIV+KV MN  K R+KALK+V   SGV S  L  ++K+++ VIG+GVD VKLT+ LR
Sbjct: 1  MKQKIVMKVHMNCQKCRTKALKVVAAASGVNSVGLEGEEKDKLVVIGDGVDVVKLTNSLR 60

Query: 61 NKLGKKDCLT 70
           K+G  D ++
Sbjct: 61 EKVGHTDIIS 70


>Glyma09g31110.2 
          Length = 127

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QKIVIK+ M+  K R+KALKI   V GV + +L  DD +++ V G  VD V L + L+
Sbjct: 1  MKQKIVIKLQMDCDKCRNKALKIAAEVRGVTTVSLEGDDNDRVAVSGVNVDMVCLANQLK 60

Query: 61 NKLG 64
           K  
Sbjct: 61 KKFS 64