Jatropha Genome Database

JcCB0014511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014511.20 - phase: 0 /pseudo/partial
         (186 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g31570.1                                                       174   4e-44
Glyma13g24850.1                                                       172   2e-43
Glyma04g11730.1                                                        68   6e-12

>Glyma07g31570.1 
          Length = 746

 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 92/110 (83%)

Query: 76  QGKKLLVIGTTSEVGFLDSIGICDSFSVTYHVPRLKADDAKKVLKQLNVFXXXXXXXXXX 135
           +GKKL+VIGTTSE+ FL+SIG CD+FSVTYH+P L   DAKKVL+QLNVF          
Sbjct: 636 KGKKLMVIGTTSELDFLESIGFCDTFSVTYHIPTLNTTDAKKVLEQLNVFTDEDIDSAAE 695

Query: 136 XLNDMPIKKLYMLIEMAAQGEHGGSAEAIYSGRQKIKIAHFYDCLQDVVR 185
            LNDMPI+KLYMLIEMAAQGEHGGSAEAI+SG++KI IAHFYDCLQDVVR
Sbjct: 696 ALNDMPIRKLYMLIEMAAQGEHGGSAEAIFSGKEKISIAHFYDCLQDVVR 745


>Glyma13g24850.1 
          Length = 742

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 91/110 (82%)

Query: 76  QGKKLLVIGTTSEVGFLDSIGICDSFSVTYHVPRLKADDAKKVLKQLNVFXXXXXXXXXX 135
           +GKKL+VIGTTSE+ FL+SIG CD+FSVTYH+P L   DAKKVL+QLNVF          
Sbjct: 633 KGKKLMVIGTTSELDFLESIGFCDTFSVTYHIPTLNTKDAKKVLEQLNVFSDEDIDSAAE 692

Query: 136 XLNDMPIKKLYMLIEMAAQGEHGGSAEAIYSGRQKIKIAHFYDCLQDVVR 185
            LNDMPI+KLYMLIEMAAQGE GGSAEAI+SG++KI IAHFYDCLQDVVR
Sbjct: 693 ALNDMPIRKLYMLIEMAAQGEQGGSAEAIFSGKEKINIAHFYDCLQDVVR 742


>Glyma04g11730.1 
          Length = 304

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 77  GKKLLVIGTTSEVGFLDSIGICDSFSVTYHVPRLKADDAKKVLKQLNVF 125
           GKKL+VIGTTSE+ FL+SIG CD+FSVTYH+P L   DAKK    + +F
Sbjct: 198 GKKLMVIGTTSELDFLESIGFCDTFSVTYHIPTLNTKDAKKFKINVKLF 246