Jatropha Genome Database

JcCB0012961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.30 - phase: 0 /pseudo/partial
         (99 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g31430.1                                                        49   2e-06
Glyma19g21710.1                                                        47   5e-06

>Glyma09g31430.1 
          Length = 311

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/23 (91%), Positives = 22/23 (95%)

Query: 27 FINEVASISRTSHVNIVTLSGFC 49
          FINEVASISRTSHVN+VTL GFC
Sbjct: 43 FINEVASISRTSHVNVVTLVGFC 65


>Glyma19g21710.1 
          Length = 511

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 25/31 (80%)

Query: 27  FINEVASISRTSHVNIVTLSGFCSRVLKEHL 57
           FINEVASISRTSHVNIVTL GFC    K+ L
Sbjct: 261 FINEVASISRTSHVNIVTLIGFCFEKSKKAL 291