Jatropha Genome Database

JcCB0012961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.20 - phase: 0 /partial
         (77 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g00700.2                                                       112   6e-26
Glyma17g00700.1                                                       112   6e-26
Glyma17g00690.1                                                       100   4e-22
Glyma01g34360.1                                                        97   4e-21

>Glyma17g00700.2 
          Length = 219

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 2   ALEKLLKDHAGKYATGDEVFLADLFLAPQIHAA-ERFKVDMTQFPLLLRLYEAYNELPAF 60
           ALEKLLKDH G+YATGDEVFLAD+FLAPQ+HAA +RF + M +FP+L RL+E YNE+PAF
Sbjct: 147 ALEKLLKDHTGRYATGDEVFLADIFLAPQLHAAFKRFNIHMNEFPILARLHETYNEIPAF 206

Query: 61  QKAMPQKQPDA 71
           Q+A+P+ QPDA
Sbjct: 207 QEALPENQPDA 217


>Glyma17g00700.1 
          Length = 219

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 2   ALEKLLKDHAGKYATGDEVFLADLFLAPQIHAA-ERFKVDMTQFPLLLRLYEAYNELPAF 60
           ALEKLLKDH G+YATGDEVFLAD+FLAPQ+HAA +RF + M +FP+L RL+E YNE+PAF
Sbjct: 147 ALEKLLKDHTGRYATGDEVFLADIFLAPQLHAAFKRFNIHMNEFPILARLHETYNEIPAF 206

Query: 61  QKAMPQKQPDA 71
           Q+A+P+ QPDA
Sbjct: 207 QEALPENQPDA 217


>Glyma17g00690.1 
          Length = 72

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 3  LEKLLKDHAGKYATGDEVFLADLFLAPQIHAA-ERFKVDMTQFPLLLRLYEAYNELPAFQ 61
          LEKLLKDHA +YATGDE+ LADLFLAPQ+  A +RF VDM +FP L RL+E YNE+ AF+
Sbjct: 1  LEKLLKDHARRYATGDEILLADLFLAPQLDTAIKRFNVDMKEFPTLSRLHETYNEMAAFR 60

Query: 62 KAMPQKQPDA 71
          KA+P+ QPDA
Sbjct: 61 KALPENQPDA 70


>Glyma01g34360.1 
          Length = 257

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 57/72 (79%), Gaps = 1/72 (1%)

Query: 1   SALEKLLKDHAGKYATGDEVFLADLFLAPQIH-AAERFKVDMTQFPLLLRLYEAYNELPA 59
           SALEKLLKD AG YATG+ +++AD+FLAPQI  A +RF +DM++FP L RLYE Y  LP 
Sbjct: 181 SALEKLLKDFAGTYATGEHIYMADVFLAPQITLAVQRFDIDMSKFPTLSRLYETYKALPE 240

Query: 60  FQKAMPQKQPDA 71
           FQ + PQ+QPDA
Sbjct: 241 FQASSPQRQPDA 252