Jatropha Genome Database

JcCB0011561.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011561.40 + phase: 0 
         (132 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g37200.1                                                       202   8e-53
Glyma13g26270.1                                                       194   2e-50
Glyma09g11970.1                                                       106   6e-24

>Glyma15g37200.1 
          Length = 131

 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 114/129 (88%), Gaps = 2/129 (1%)

Query: 4   TLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQIRK 63
            LR++KV PNSA++EEAR RVF FFRTACRS+P++M+IYNL DVV+VSELRSS++SQIRK
Sbjct: 5   ALRNVKVLPNSANMEEARHRVFQFFRTACRSLPSVMEIYNLYDVVSVSELRSSVSSQIRK 64

Query: 64  NSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMSDFL 123
           N +VT+PKVIDMLLFKGMEEL N+V+H+KQRHHIIGQYVVGQ   VQD  +KDQG S FL
Sbjct: 65  NIHVTDPKVIDMLLFKGMEELKNVVDHSKQRHHIIGQYVVGQQ--VQDSATKDQGTSTFL 122

Query: 124 KNFYKSNYY 132
           KNFY +NY+
Sbjct: 123 KNFYNTNYF 131


>Glyma13g26270.1 
          Length = 131

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 112/129 (86%), Gaps = 2/129 (1%)

Query: 4   TLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQIRK 63
            LR++KV PNSA++EEAR RVF+FFRTACRS+P++M+IYNL DVV+VSELRSS+ASQIR 
Sbjct: 5   ALRNVKVLPNSANMEEARHRVFEFFRTACRSLPSVMEIYNLYDVVSVSELRSSVASQIRN 64

Query: 64  NSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMSDFL 123
           N +VT+PKVIDMLLFKGMEEL N+V+H+KQRHHIIGQYVVG+   VQD  +KD   S FL
Sbjct: 65  NIHVTDPKVIDMLLFKGMEELKNVVDHSKQRHHIIGQYVVGRQ--VQDSATKDPDTSTFL 122

Query: 124 KNFYKSNYY 132
           KNFY +NY+
Sbjct: 123 KNFYNTNYF 131


>Glyma09g11970.1 
          Length = 150

 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 62/70 (88%)

Query: 4  TLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQIRK 63
           LR++KV PNSA++EEAR RVF+FFRTACR +P++M+IYNL DVV+VSELRSS+ASQIR 
Sbjct: 5  ALRNVKVLPNSANMEEARHRVFEFFRTACRLLPSVMEIYNLYDVVSVSELRSSVASQIRN 64

Query: 64 NSNVTNPKVI 73
          N +VT+PKV 
Sbjct: 65 NIHVTDPKVF 74