Jatropha Genome Database

JcCB0010841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010841.20 - phase: 0 /partial
         (181 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g27500.1                                                        54   1e-07

>Glyma16g27500.1 
          Length = 753

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 19/88 (21%)

Query: 1   SFRARTERALVKRQIEDTGSRVAIKEILSFTLTEKGSFVKEILLQEVAKGLDALGLATLD 60
           S RA+TE+A+VK Q E T S + +KEILSFTLTE              KGLDALGLAT++
Sbjct: 519 SLRAKTEKAIVK-QTEGTDSTMVMKEILSFTLTE--------------KGLDALGLATME 563

Query: 61  FLTXXXXXXXXXXXXXXXXXMTEEDIMN 88
                               MT+EDI+N
Sbjct: 564 ----TAAARVPFSSFFYSPLMTKEDIIN 587