Jatropha Genome Database

JcCB0009671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009671.20 - phase: 0 
         (366 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g00340.1                                                       486   e-137
Glyma02g48140.1                                                        54   2e-07

>Glyma14g00340.1 
          Length = 360

 Score =  486 bits (1251), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 253/361 (70%), Positives = 294/361 (81%), Gaps = 7/361 (1%)

Query: 2   AICFLSPSKPVTFSPSLQNK-RPPPLLRCNFALPTIATTEPEPVYTSVRSFAPATVANLG 60
           + CFL PS     + SL+ + R    +RC+ ++      EPEPV T V++FAPATVANLG
Sbjct: 4   STCFLCPS-----TASLKGRARFRIRIRCSSSVSVNIRREPEPVTTLVKAFAPATVANLG 58

Query: 61  PGFDFLGCAVDGLGDFVAVRIDPSVHPGEISISDITGTHASKKLSKNPLWNCATIAAIAA 120
           PGFDFLGCAVDGLGD V+V++DP VHPGEI ISDI+G HA  KLSKNPLWNCA IAAI  
Sbjct: 59  PGFDFLGCAVDGLGDIVSVKVDPQVHPGEICISDISG-HAPNKLSKNPLWNCAGIAAIEV 117

Query: 121 MKMLNIRSVGLSLTLEKGLPLGSGLGXXXXXXXXXXXXXNEIFGGKLQVKDLVRAGLESE 180
           MKML+IRSVGLSL+LEKGLPLGSGLG             NE+FG KL V++LV A L+SE
Sbjct: 118 MKMLSIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNELFGKKLSVEELVLASLKSE 177

Query: 181 AKVSGYHADNIAPAIMGGFVLIRNYNPLELMSLNFPEEKEIFFVLVSPDFEAPTKKMRAA 240
            KVSGYHADN+AP+IMGGFVLI +Y+PLELM L FP EKE++FVLV+P+FEAPTKKMRAA
Sbjct: 178 EKVSGYHADNVAPSIMGGFVLIGSYSPLELMPLKFPAEKELYFVLVTPEFEAPTKKMRAA 237

Query: 241 LPAEVGIPHHVWNCSQAGALVASVLQGDLVGLGKALSNDKIVEPKRAPLIPGMEEVKKAA 300
           LP E+G+PHHVWNCSQAGALVASVLQGD+VGLGKALS+DKIVEP+RAPLIPGME VK+AA
Sbjct: 238 LPTEIGMPHHVWNCSQAGALVASVLQGDVVGLGKALSSDKIVEPRRAPLIPGMEAVKRAA 297

Query: 301 ISAGAFGCTISGAGPTAVAVIDDEERGKEIGEKMVEAFLKEGNLKAVAMVKRLDRVGARL 360
           I AGAFGCTISGAGPTAVAVIDDE+ G  I + M++AFL  GNLKA A VK+LDR+GAR 
Sbjct: 298 IQAGAFGCTISGAGPTAVAVIDDEQTGHLIAKHMIDAFLHVGNLKASANVKQLDRLGARR 357

Query: 361 V 361
           +
Sbjct: 358 I 358


>Glyma02g48140.1 
          Length = 164

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 274 KALSNDKIVEPKRAPLIPGMEEVKKAAISAGAFGCTISGAGPTAVAVIDDEERGKEIGEK 333
           K + N +I E +  P  P     ++     G      SG     VAVID+E+ G  I + 
Sbjct: 76  KGVINYEINE-QETPTHPQELRWRRRRKHGGCQEGCHSGWWFWLVAVIDNEQTGHLIAQH 134

Query: 334 MVEAFLKEGNLKAVAMVKRLDRVGARLV 361
           M+ +FLK+G LKA A +K+LDR+G+R +
Sbjct: 135 MIHSFLKDGYLKASANLKQLDRLGSRRI 162