Jatropha Genome Database

JcCB0009541.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.30 + phase: 0 
         (208 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g09640.1                                                       252   2e-67
Glyma10g22710.1                                                       250   7e-67
Glyma13g30730.1                                                       106   2e-23
Glyma08g12980.1                                                        98   7e-21
Glyma15g08550.1                                                        97   8e-21
Glyma08g12980.2                                                        85   5e-17

>Glyma02g09640.1 
          Length = 215

 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 135/154 (87%)

Query: 55  PFPAEIESGFAEKVVGNVDTEHKILIPNISALSLAQQQCTPVSPLQAPIDKDDAQKLLKK 114
           PFPAE+ES F EKV+G  +TEHKILIP I+AL+L+QQ+C PVSP Q PI  DDAQ L++K
Sbjct: 62  PFPAELESSFGEKVLGYSNTEHKILIPTITALALSQQECAPVSPSQPPISLDDAQTLIRK 121

Query: 115 VLGWRLLEEENGLKLQCLWKLRDFKCGVELINRIYKVAEASGHFPDLHLVDTNQVRAELW 174
           V+GWRL+ EE GLK+QCLWKLRDFKCGVELINRI KV EA GHFP+++L   NQVRAELW
Sbjct: 122 VVGWRLVNEEGGLKIQCLWKLRDFKCGVELINRISKVVEALGHFPNIYLEQPNQVRAELW 181

Query: 175 TSSIGGLSMNDFIVAAKMDEIKTSDLVPRKRVWA 208
           T+SIGGL+MNDFIVAAK+DEIKTSDLVPRKRVWA
Sbjct: 182 TASIGGLTMNDFIVAAKIDEIKTSDLVPRKRVWA 215


>Glyma10g22710.1 
          Length = 216

 Score =  250 bits (639), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 134/154 (87%)

Query: 55  PFPAEIESGFAEKVVGNVDTEHKILIPNISALSLAQQQCTPVSPLQAPIDKDDAQKLLKK 114
           PFPAE+ES F EKV+G  +TEHKILIP I+AL L+QQ+C PVS  Q PI  DDAQ L++K
Sbjct: 63  PFPAELESSFGEKVLGYGNTEHKILIPTITALGLSQQECAPVSSAQPPISLDDAQTLIRK 122

Query: 115 VLGWRLLEEENGLKLQCLWKLRDFKCGVELINRIYKVAEASGHFPDLHLVDTNQVRAELW 174
           V+GWRL+ EENGLK+QCLWKLRDFKCGVELINRI KV EA GHFP+++L   NQVRAELW
Sbjct: 123 VVGWRLVNEENGLKIQCLWKLRDFKCGVELINRISKVVEAEGHFPNIYLEQPNQVRAELW 182

Query: 175 TSSIGGLSMNDFIVAAKMDEIKTSDLVPRKRVWA 208
           T+SIGGLSMNDFIVAAK+D+IKTSDLVPRKRVWA
Sbjct: 183 TASIGGLSMNDFIVAAKIDQIKTSDLVPRKRVWA 216


>Glyma13g30730.1 
          Length = 184

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 3/119 (2%)

Query: 88  LAQQQCTPVSP--LQAPIDKDDAQKLLKKVLGWRLLEEENGLKLQCLWKLRDFKCGVELI 145
           L+ + C P +   LQ P+ +D A+ +L+++  W L+ E+  LKL+  WK++ F  G+E  
Sbjct: 64  LSTENCVPCNTKDLQ-PMTEDAARTMLQQIAQWNLVNEDGVLKLRRSWKVKTFTKGLEFF 122

Query: 146 NRIYKVAEASGHFPDLHLVDTNQVRAELWTSSIGGLSMNDFIVAAKMDEIKTSDLVPRK 204
             I  +AEA GH PDLHLV  N V  E+WT S+GGL+ NDFI+AAK++E+   DL+ RK
Sbjct: 123 RIIAGLAEAEGHHPDLHLVGWNNVTIEIWTHSVGGLTQNDFILAAKINELNLHDLLRRK 181


>Glyma08g12980.1 
          Length = 132

 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 83  ISALSLAQQQCTPVSPLQ-APIDKDDAQKLLKKVLGWRLLEEENGLKLQCLWKLRDFKCG 141
           IS   L  ++C P +  +  P+ +D A  L+ +V  W L+ E+  +KL+  W ++ F  G
Sbjct: 7   ISPTRLTDKKCVPCNLKELRPMSEDAAHTLMPQVAEWNLVNEDGVMKLRRSWAVKTFTKG 66

Query: 142 VELINRIYKVAEASGHFPDLHLVDTNQVRAELWTSSIGGLSMNDFIVAAKMDEIKTSDLV 201
           +E    +  +AE  GH PDLHLV  N V  E+WT ++GGL+ NDFI+AAK+D++   DL+
Sbjct: 67  LEFFRIVAVLAENEGHHPDLHLVGWNNVTIEIWTHAVGGLTENDFILAAKIDKLDVLDLL 126

Query: 202 PRK 204
            RK
Sbjct: 127 RRK 129


>Glyma15g08550.1 
          Length = 180

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 3/119 (2%)

Query: 88  LAQQQCTPVSP--LQAPIDKDDAQKLLKKVLGWRLLEEENGLKLQCLWKLRDFKCGVELI 145
           L+ ++C P +   LQ P+ +D A  LL ++  W L+ E   LKL+  WK++ F  G+E  
Sbjct: 60  LSSKKCVPCNTKDLQ-PMTEDAAGTLLSQIAQWNLVNEGGVLKLRRSWKVKTFTKGLEFF 118

Query: 146 NRIYKVAEASGHFPDLHLVDTNQVRAELWTSSIGGLSMNDFIVAAKMDEIKTSDLVPRK 204
             I  +A+A GH PDLHLV  N V  E+ T S+GGL+ NDFI+AAK++E+   DL+ RK
Sbjct: 119 RIIADLADAEGHHPDLHLVAWNNVTIEICTHSVGGLTQNDFILAAKINELNLHDLLRRK 177


>Glyma08g12980.2 
          Length = 128

 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 83  ISALSLAQQQCTPVSPLQ-APIDKDDAQKLLKKVLGWRLLEEENGLKLQCLWKLRDFKCG 141
           IS   L  ++C P +  +  P+ +D A  L+ +V  W L+ E+  +KL+  W ++ F  G
Sbjct: 7   ISPTRLTDKKCVPCNLKELRPMSEDAAHTLMPQVAEWNLVNEDGVMKLRRSWAVKTFTKG 66

Query: 142 VELINRIYKVAEASGHFPDLHLVDTNQVRAELWTSSIGGLSMNDFIVAAKMDEIKTSDLV 201
           +E    +  +AE  GH PDLHLV  N V  E+WT ++     NDFI+AAK+D++   DL+
Sbjct: 67  LEFFRIVAVLAENEGHHPDLHLVGWNNVTIEIWTHAVE----NDFILAAKIDKLDVLDLL 122

Query: 202 PRK 204
            RK
Sbjct: 123 RRK 125