Jatropha Genome Database

JcCB0009521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009521.10 - phase: 1 /pseudo/partial
         (167 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g32360.1                                                        65   4e-11

>Glyma19g32360.1 
          Length = 1076

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 28/109 (25%)

Query: 61  FVKDAVERDHKLDDILIPIIQHVLLISKFPFCTLLIFDVKSSINFSLRSKDLKHGGQALI 120
           FV D+   +  LD++L+P+I + L               KS           KHG QA+I
Sbjct: 68  FVTDSRTNNSSLDEVLLPVIDNAL---------------KS-----------KHGDQAMI 101

Query: 121 LINWLFQDEFFFQAVVRSLADIIDRK--DDRYIALGWCILIRGLVEYER 167
           L++WLFQDE  FQ V  +LA I+ RK   DRY+ LGWC+L+R LVE+E 
Sbjct: 102 LLSWLFQDELLFQPVAEALASIVSRKHVHDRYLLLGWCLLLRNLVEFEN 150