Jatropha Genome Database

JcCB0008641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008641.10 + phase: 2 /pseudo/partial
         (246 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g07200.1                                                       300   1e-81
Glyma02g41760.1                                                       262   2e-70

>Glyma14g07200.1 
          Length = 620

 Score =  300 bits (768), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 158/168 (94%), Gaps = 2/168 (1%)

Query: 42  PWEQWTLVSEVVLEAGKQRIDKWNLMGRLGNQARKLITQCAAWFRPDIIYVKRPVYQCRF 101
           PW+QWTLVSEVVLEAGKQR+DKWNLMGRLGN+AR  I QCAAW RPDI+YVK+PV+QCRF
Sbjct: 253 PWQQWTLVSEVVLEAGKQRLDKWNLMGRLGNKARSSIGQCAAWMRPDIVYVKKPVFQCRF 312

Query: 102 EPQEDFFRGLVPFLDPKTERDFIFELRNEEDGGSVEMCTYYEGLCKIVKVSQKAYVDDVV 161
           EPQ+DFF+ ++PFL+PKTE+DF+FEL N  D GSVE+CTY+ GLCKIVKV+QKA+VDDVV
Sbjct: 313 EPQDDFFKPIIPFLNPKTEQDFLFELEN--DDGSVELCTYFGGLCKIVKVNQKAFVDDVV 370

Query: 162 NAYEKLSEEKKSRCLEFLLRNHPVQLLHPYTKEWKAKLEEMELGCDAP 209
           NAY+KLS+EKKS+CLEFLL+NHPV+LLHPYTKEWKAKLEEMELGCDAP
Sbjct: 371 NAYQKLSDEKKSKCLEFLLKNHPVELLHPYTKEWKAKLEEMELGCDAP 418


>Glyma02g41760.1 
          Length = 510

 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 144/168 (85%), Gaps = 14/168 (8%)

Query: 42  PWEQWTLVSEVVLEAGKQRIDKWNLMGRLGNQARKLITQCAAWFRPDIIYVKRPVYQCRF 101
           PW+QWTLVSEV           WNLMGRLGN+AR  I QCAAW RPDI+YVK+PV+QCRF
Sbjct: 157 PWQQWTLVSEV-----------WNLMGRLGNKARSSIGQCAAWMRPDIVYVKKPVFQCRF 205

Query: 102 EPQEDFFRGLVPFLDPKTERDFIFELRNEEDGGSVEMCTYYEGLCKIVKVSQKAYVDDVV 161
           EPQ+DFF+ ++PFL+PKTE+DF+FEL N  D GSVE+CTY+ GLCKIVKV+QKA V+DVV
Sbjct: 206 EPQDDFFKPIIPFLNPKTEQDFLFELEN--DDGSVELCTYFGGLCKIVKVNQKALVNDVV 263

Query: 162 NAYEKLSEEKKSRCLEFLLRNHPVQLLHPYTKEWKAKLEEMELGCDAP 209
           NAY+KLS+EK S+CLEFLL NHPV+LLHPYTKEWKAKL+EMELGCDAP
Sbjct: 264 NAYQKLSDEKMSKCLEFLL-NHPVELLHPYTKEWKAKLDEMELGCDAP 310