Jatropha Genome Database

JcCB0008321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.20 + phase: 0 /partial
         (152 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g05480.1                                                        60   8e-10

>Glyma16g05480.1 
          Length = 375

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 42/85 (49%)

Query: 68  RKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVIDQR 127
           RKKRM RQRR ++    +                                   AR IDQR
Sbjct: 122 RKKRMARQRRSTNPTLLMNPLINNNNNKSGSSLPSPSTASSSHVPLSSSTLPPAREIDQR 181

Query: 128 RLSFLFQKELKNSDVSSLKRMILPK 152
           RL FLFQKELKNSDVSSL+RMILPK
Sbjct: 182 RLRFLFQKELKNSDVSSLRRMILPK 206