Jatropha Genome Database

JcCB0006421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.10 - phase: 0 
         (211 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g37710.1                                                       195   4e-50
Glyma14g40450.1                                                       175   3e-44
Glyma06g11510.1                                                        75   4e-14
Glyma04g43180.1                                                        75   4e-14

>Glyma17g37710.1 
          Length = 417

 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 121/197 (61%), Gaps = 5/197 (2%)

Query: 1   MALLTFLPEQREKG-XXXXXXXXXXXXXXXXXXXPSSWDQIKNLLTCKQVEDSSVHDPSK 59
           MALLT LPEQ                         SSWDQIKNLLTCKQ+E S VHDPSK
Sbjct: 1   MALLTSLPEQSSSTPKRHHKRKPQQQQQQQKQKPASSWDQIKNLLTCKQIEGSRVHDPSK 60

Query: 60  NXXXXXXXXXXXXXXXXFRDVVHGNTRVVDRADNSPESSI-VGQET-GLLSRKPVXXXXX 117
                            FRDVVHGNTRVV R+DNS   S  +GQET GLL+RKPV     
Sbjct: 61  VVSGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETNGLLTRKPVTTTTT 120

Query: 118 XXXXXXXXXXXXATYTSSS--RGMQFRKLSGCYECHMIVDPSRYPTPRTTICACSHCGEV 175
                       ATYTSSS  RGMQFRKLSGCYECHMI+DPSR P  R+T+CACSHCGEV
Sbjct: 121 TTTRSSAKSHGGATYTSSSSSRGMQFRKLSGCYECHMIIDPSRLPIARSTVCACSHCGEV 180

Query: 176 FPKSESLELHQKVRHAG 192
           FPK ESLELHQ VRHAG
Sbjct: 181 FPKMESLELHQAVRHAG 197


>Glyma14g40450.1 
          Length = 414

 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 121/201 (60%), Gaps = 12/201 (5%)

Query: 1   MALLTFLPEQ--------REKGXXXXXXXXXXXXXXXXXXXPSSWDQIKNLLTCKQVEDS 52
           MALLT LPEQ        + K                     SSWDQIKNLLTCKQ+E+S
Sbjct: 1   MALLTSLPEQFSSTPKRHKRKPQQQQQKQKQKQKQKQKQKPASSWDQIKNLLTCKQMEES 60

Query: 53  SVHDPSKNXXXXXXXXXXXXXXXXFRDVVHGNTRVVDRADNSPESSI-VGQET-GLLSRK 110
            VHDPSK                 FRDVVHGNTRVV R+DNS   S  +GQET GLL+RK
Sbjct: 61  RVHDPSK-ITGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETNGLLTRK 119

Query: 111 PVXXXXXXXXXXXXXXXXXATYTSSSRGMQFRKLSGCYECHMIVDPSRYPTPRTTICACS 170
           PV                  + +SSSRGMQFRKLSGCYECHMI+DPSR P  R+T+CACS
Sbjct: 120 PVTTTTTRSAKSNGGATC-TSSSSSSRGMQFRKLSGCYECHMIIDPSRLPIARSTVCACS 178

Query: 171 HCGEVFPKSESLELHQKVRHA 191
           HCGEVFPK ESLELHQ VRHA
Sbjct: 179 HCGEVFPKMESLELHQAVRHA 199


>Glyma06g11510.1 
          Length = 387

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 5/59 (8%)

Query: 137 RGMQFRKLSGCYECHMIVDP----SRYPTPRTTICACSHCGEVFPKSESLELHQKVRHA 191
           RGM FR+LSGCYEC M+VDP    +R P+ R++IC+C  CGE+  K+ESLE HQ V+HA
Sbjct: 125 RGMPFRRLSGCYECRMVVDPVLGFTRDPSLRSSICSCPDCGEIM-KAESLEHHQAVKHA 182


>Glyma04g43180.1 
          Length = 426

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 5/59 (8%)

Query: 137 RGMQFRKLSGCYECHMIVDP----SRYPTPRTTICACSHCGEVFPKSESLELHQKVRHA 191
           RGM FR+LSGCYEC M+VDP    +R P+ R++IC+C  CGE+  K+ESLE HQ V+HA
Sbjct: 165 RGMPFRRLSGCYECRMVVDPVLGFTRDPSLRSSICSCPDCGEIM-KAESLEHHQAVKHA 222