Jatropha Genome Database

JcCB0005461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.10 - phase: 0 /pseudo/partial
         (496 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g26450.1                                                       429   e-120
Glyma20g17690.1                                                       363   e-100
Glyma10g23920.1                                                       212   9e-55
Glyma10g23930.1                                                       209   4e-54
Glyma10g23900.1                                                       208   1e-53
Glyma10g23950.1                                                       174   3e-43
Glyma10g23960.1                                                       149   8e-36
Glyma10g23890.1                                                        77   3e-14
Glyma19g40350.1                                                        50   4e-06

>Glyma10g26450.1 
          Length = 975

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/332 (65%), Positives = 245/332 (73%), Gaps = 24/332 (7%)

Query: 163 VGDFYEAIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVE 222
           VGDFYEA GIDAC LVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLT+NG+SVCIVE
Sbjct: 1   VGDFYEAWGIDACVLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTQNGFSVCIVE 60

Query: 223 EVQGPTQARSRKSRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCIVSV 282
           EVQGPTQ RSRK RFISGHAHPG+PYV+GL  VDHDL+FPEPMPVVGIS SARGYCI  V
Sbjct: 61  EVQGPTQVRSRKRRFISGHAHPGNPYVYGLAAVDHDLNFPEPMPVVGISHSARGYCINMV 120

Query: 283 LEAMKTYSLEDGLTEEALVAKLRTCRYHHLFLHTSLRNNSSGTCRXXXXXXXXXXXXXCS 342
           LE MKTYS ED LTEEA+V KLRTC+YH+LFLHTSLR NS GTC              CS
Sbjct: 121 LETMKTYSSEDCLTEEAVVTKLRTCQYHYLFLHTSLRRNSCGTCNWGEFGEGGLLWGECS 180

Query: 343 TRHFEWFQGNPVTELLFKVRELYGLENGVAFRNVTVPSENRPHSLHLGTATQIGQFNFTX 402
           +RHF+WF GNPV++LL KV+ELY +++ V FRN TV S +R   L LGT+TQIG      
Sbjct: 181 SRHFDWFDGNPVSDLLAKVKELYSIDDEVTFRNTTVSSGHRARPLTLGTSTQIGAIPTE- 239

Query: 403 TVXIEFFMXCQPILXQVFHTLRCHTNRRNTLFIEGIASIKLLRYVRDLLLNPPAYEIAST 462
                      P L +V     C+          G+  +    Y+R+LLLNPP+YEIAS 
Sbjct: 240 ---------GIPSLLKVLLPSNCN----------GLPVL----YIRELLLNPPSYEIASK 276

Query: 463 IQAICKLMSNVTCSIPEFTCVSSAKVVFYYFW 494
           IQA CKLMS+VTCSIPEFTCVSSAK+V    W
Sbjct: 277 IQATCKLMSSVTCSIPEFTCVSSAKLVKLLEW 308


>Glyma20g17690.1 
          Length = 260

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/235 (74%), Positives = 191/235 (81%)

Query: 162 RVGDFYEAIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIV 221
           +VG+FYEA GIDAC LVEY GLNP GGLRSDSIPRAGCPVVNLRQTLDDLT NGYSVCIV
Sbjct: 1   QVGEFYEAWGIDACILVEYVGLNPIGGLRSDSIPRAGCPVVNLRQTLDDLTTNGYSVCIV 60

Query: 222 EEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCIVS 281
           EE QGP+QARSRK RFISGHAHPG+PYV+GL  VDHDL+FPEPMPVVGIS SARGYCI  
Sbjct: 61  EEAQGPSQARSRKRRFISGHAHPGNPYVYGLATVDHDLNFPEPMPVVGISHSARGYCINM 120

Query: 282 VLEAMKTYSLEDGLTEEALVAKLRTCRYHHLFLHTSLRNNSSGTCRXXXXXXXXXXXXXC 341
           VLE MKTYS ED LTEEA+V KLRTC+YHHLFLHTS+R NSSGTC              C
Sbjct: 121 VLETMKTYSSEDCLTEEAVVTKLRTCQYHHLFLHTSIRQNSSGTCDWGEFGEGGLLWGEC 180

Query: 342 STRHFEWFQGNPVTELLFKVRELYGLENGVAFRNVTVPSENRPHSLHLGTATQIG 396
           S+RHFEWF GNP+++LL KV+ELY L+  V FRN TV S NR   L LGT+TQIG
Sbjct: 181 SSRHFEWFDGNPISDLLAKVKELYSLDEEVTFRNATVYSGNRAQPLTLGTSTQIG 235


>Glyma10g23920.1 
          Length = 233

 Score =  212 bits (539), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 125/159 (78%), Gaps = 5/159 (3%)

Query: 105 RLQQCRKPSTIQLVKRLMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVG 164
           RLQ CRK ST+QL +RL YSNL GL+ N+KNGSLKEG LNWEMLQFK KFPR+VLLCRVG
Sbjct: 1   RLQMCRKLSTVQLTERLDYSNLPGLNPNMKNGSLKEGTLNWEMLQFKPKFPRQVLLCRVG 60

Query: 165 DFYEAIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCI---V 221
           +FYEA GI+ C LV Y GLNPFGGL+SDSIPRAGCPVVNL+QTLDD T+ GYSVC+    
Sbjct: 61  EFYEAWGINVCILVAYEGLNPFGGLQSDSIPRAGCPVVNLQQTLDDRTQGGYSVCLPSYQ 120

Query: 222 EEVQGPTQARSRKSRFISGHAHPGSPYVFGL-VGVDHDL 259
            + QG +QARSRK  FISG+      YV GL +GV H L
Sbjct: 121 RQAQGRSQARSRKRLFISGYVQH-FLYVNGLCLGVCHQL 158


>Glyma10g23930.1 
          Length = 224

 Score =  209 bits (533), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 126/172 (73%), Gaps = 18/172 (10%)

Query: 105 RLQQCRKPSTIQLVKRLMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVG 164
           RLQ CRK ST+QL +RL YSNL GL+ N+KNGSLK G LNWEMLQFK KFPR+VLLCRVG
Sbjct: 1   RLQMCRKLSTVQLTERLDYSNLPGLNPNMKNGSLKVGTLNWEMLQFKPKFPRQVLLCRVG 60

Query: 165 DFYEAIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVE-- 222
           +FYEA GI+ C LVEY  LNPFGGL+SDSIPRAGCPVVNLRQTLDD T++GYSV I E  
Sbjct: 61  EFYEAWGINVCILVEYEVLNPFGGLQSDSIPRAGCPVVNLRQTLDDRTQSGYSVVIYEYM 120

Query: 223 --------------EVQGPTQARSRKSRFISGHAHPGSPYVFGL-VGVDHDL 259
                         + QGPTQARSRK  FISG+      YV GL +GV H L
Sbjct: 121 LLINFGLNTALWRRQAQGPTQARSRKRLFISGYVQ-HFLYVNGLCLGVCHQL 171


>Glyma10g23900.1 
          Length = 190

 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 122/152 (80%), Gaps = 7/152 (4%)

Query: 109 CRKPSTIQLVKRLMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGDFYE 168
           CRK ST+QL +RL YSNL GL+ N+KNGSLKEG LNWEMLQFK KFPR+VLLCRVG+FYE
Sbjct: 1   CRKLSTVQLTERLDYSNLPGLNPNMKNGSLKEGTLNWEMLQFKPKFPRQVLLCRVGEFYE 60

Query: 169 AIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT 228
           A GI+ C LVEY GLNPFGGL+SDSI RAGCPVVNL+QTLDDLT++GYSV      QGPT
Sbjct: 61  AWGINVCILVEYEGLNPFGGLQSDSILRAGCPVVNLQQTLDDLTQSGYSV-----AQGPT 115

Query: 229 QARSRKSRFISGHAHPGSPYVFGL-VGVDHDL 259
           QARSRK  FISG+      YV GL +GV H L
Sbjct: 116 QARSRKRLFISGYVQH-FLYVNGLCLGVCHQL 146


>Glyma10g23950.1 
          Length = 190

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 90/100 (90%)

Query: 121 LMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACFLVEY 180
            +YSNL GL+ N+KNGSLKEG LNWEMLQFK KFPR+VLLCRVG+FYEA GI+ C LVEY
Sbjct: 2   FLYSNLPGLNSNMKNGSLKEGTLNWEMLQFKPKFPRQVLLCRVGEFYEAWGINVCILVEY 61

Query: 181 AGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCI 220
            GLNPFGGL+SDSIPRAGCPVVNLRQTLDDLT++GYSV +
Sbjct: 62  EGLNPFGGLQSDSIPRAGCPVVNLRQTLDDLTQSGYSVVM 101


>Glyma10g23960.1 
          Length = 285

 Score =  149 bits (376), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 85/112 (75%), Gaps = 10/112 (8%)

Query: 106 LQQCRKPSTIQLVKRLMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGD 165
           LQ C K ST+QL +RL YS L GL+ N+KNGSLKEG LNWEMLQF  KFPR+VLLCRVG+
Sbjct: 2   LQMCIKLSTVQLTERLDYSTLPGLNPNMKNGSLKEGTLNWEMLQFTPKFPRQVLLCRVGE 61

Query: 166 FYEAIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYS 217
           FYEA GI+ C LVEY GLNPFGGL+SDSI RAG           DLT++GYS
Sbjct: 62  FYEAWGINVCILVEYEGLNPFGGLQSDSIMRAG----------YDLTQSGYS 103


>Glyma10g23890.1 
          Length = 43

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 37/43 (86%)

Query: 159 LLCRVGDFYEAIGIDACFLVEYAGLNPFGGLRSDSIPRAGCPV 201
           +  +VG+FYEA GI+ C LVEY GLNPFGGL+SDSIPRAGCPV
Sbjct: 1   IFAQVGEFYEAWGINVCILVEYEGLNPFGGLQSDSIPRAGCPV 43


>Glyma19g40350.1 
          Length = 1273

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 137 SLKEGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACFLVEYAGLNPFGGLRSDSIPR 196
           SL +G   W   +FKSK   +VL  ++G FYE   +DA    +   L    G +    P 
Sbjct: 329 SLSDGQKQW--WEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDQ----PH 382

Query: 197 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 234
            G P  N    ++ L R GY V +VE+   P Q   R+
Sbjct: 383 CGFPEKNFSMNVEKLARKGYRVLVVEQTDTPEQLELRR 420