Jatropha Genome Database

JcCB0004861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004861.20 - phase: 0 
         (356 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g07870.1                                                       417   e-117
Glyma04g07790.1                                                       415   e-116
Glyma11g05060.1                                                        54   3e-07
Glyma01g40230.2                                                        50   3e-06

>Glyma06g07870.1 
          Length = 343

 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/328 (65%), Positives = 244/328 (74%), Gaps = 5/328 (1%)

Query: 34  SFLLPRSVPNTVPSLTIKAASSLSSPATHKTATSASPP-----DSPDRFRVDILSESLPY 88
           SF  P    N + +     ++ L   A    A +A PP      +  ++RVD+LSESLP+
Sbjct: 16  SFPFPTKPQNQLTTSHAFPSTRLRHRAISAVANAAQPPLAAATATEGQYRVDVLSESLPF 75

Query: 89  IQKFRGKTIVVKYGGAAMKVPELKAXXXXXXXXXXCVGLRPVLVHGGGPEINHWLKLLNI 148
           IQKFRGKTIVVKYGGAAMK PEL+A          CVGLRPVLVHGGGPEIN WL  LNI
Sbjct: 76  IQKFRGKTIVVKYGGAAMKSPELQASVINDLVLLSCVGLRPVLVHGGGPEINSWLGRLNI 135

Query: 149 EPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSLINKAGATAVGLSGMDGRLLMARPTPN 208
             +F +GLRVTDA TMEIVSMVLVGKVNK LVSLINKAGATAVGLSGMDGRLL ARP P 
Sbjct: 136 PAVFRDGLRVTDADTMEIVSMVLVGKVNKTLVSLINKAGATAVGLSGMDGRLLTARPAPK 195

Query: 209 SAQLGFVGEVTRVDSTILQPLIDNSHIPVIASVAADESGQSYNINADTVXXXXXXXXXXX 268
           +A LG+VGEV RVD  +L+ LID SHIPV+ SVAADESGQ YNINADTV           
Sbjct: 196 AADLGYVGEVARVDPAVLRSLIDTSHIPVVTSVAADESGQPYNINADTVAGELAASLGAE 255

Query: 269 XXXXXTDVAGILENKDDPKSLVKEIDIKGVKKLIEEKKVAGGMIPKVNCCVRSLAQGVRT 328
                TDVAGILE+++DP SLVK+IDIKGVKK++E+ KV GGMIPKVNCCVRSLAQGV T
Sbjct: 256 KLILLTDVAGILEDRNDPDSLVKKIDIKGVKKMMEDGKVGGGMIPKVNCCVRSLAQGVIT 315

Query: 329 ASIIDGRVEHSLLHEIMSEEGIGTMITG 356
           ASIIDGRV HSLL EI+++EG GTMITG
Sbjct: 316 ASIIDGRVPHSLLLEILTDEGAGTMITG 343


>Glyma04g07790.1 
          Length = 338

 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/333 (65%), Positives = 252/333 (75%), Gaps = 15/333 (4%)

Query: 39  RSVPNTVPSL--TIKAASSLSS----PAT---HKTATSASPPDSP------DRFRVDILS 83
           +++ N  PS   T K  + L++    P+T   H+  ++ + P  P       ++RVD+LS
Sbjct: 6   KTLTNLCPSFPFTTKPQNPLTTHHSFPSTRLRHRAISAVANPVQPPLTTTEGQYRVDVLS 65

Query: 84  ESLPYIQKFRGKTIVVKYGGAAMKVPELKAXXXXXXXXXXCVGLRPVLVHGGGPEINHWL 143
           ESLP+IQKFRGKTIVVKYGGAAMK PEL+A          CVGLRPVLVHGGGPEIN WL
Sbjct: 66  ESLPFIQKFRGKTIVVKYGGAAMKSPELQASVINDLVLLSCVGLRPVLVHGGGPEINSWL 125

Query: 144 KLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSLINKAGATAVGLSGMDGRLLMA 203
             LNI  +F +GLRVTDA TMEIVSMVLVGKVNK LVSLINKAGATAVGLSGMDGRLL A
Sbjct: 126 GRLNIPAVFRDGLRVTDADTMEIVSMVLVGKVNKTLVSLINKAGATAVGLSGMDGRLLTA 185

Query: 204 RPTPNSAQLGFVGEVTRVDSTILQPLIDNSHIPVIASVAADESGQSYNINADTVXXXXXX 263
           RP P +A LGFVGEV RVD T+L+ LID +HIPV+ S+AADESGQ YNINADTV      
Sbjct: 186 RPAPKAAALGFVGEVARVDPTVLRSLIDTNHIPVVTSIAADESGQPYNINADTVAGELAA 245

Query: 264 XXXXXXXXXXTDVAGILENKDDPKSLVKEIDIKGVKKLIEEKKVAGGMIPKVNCCVRSLA 323
                     TDVAGILE+++DP SLVK+IDIKGVKK++E++KV GGMIPKVNCCVRSLA
Sbjct: 246 ALGAEKLILLTDVAGILEDRNDPDSLVKKIDIKGVKKMMEDEKVGGGMIPKVNCCVRSLA 305

Query: 324 QGVRTASIIDGRVEHSLLHEIMSEEGIGTMITG 356
           QGV TASIIDGRV HSLL EI+++EG GTMITG
Sbjct: 306 QGVTTASIIDGRVPHSLLLEILTDEGAGTMITG 338


>Glyma11g05060.1 
          Length = 592

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 20/225 (8%)

Query: 51  KAASSLSSPATHKTATS--ASPPDS-PDRFRVDILSESLPYIQKFRGKTIVVKYGGAAMK 107
           ++  + SSP T   A +      DS  D   V  L ES PYI   RG+  V+      + 
Sbjct: 35  RSYCTFSSPKTKTNAFTVRGCGQDSVEDHHFVKALRESQPYISVHRGRLFVLLISAQLVA 94

Query: 108 VPELKAXXXXXXXXXXCVGLRPVLVHGGGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIV 167
            P               +G+R VLV G   +I+  L     +P++    R+TD +++E  
Sbjct: 95  GPYFNPILKDIAFLNH-LGIRFVLVPGTHVQIDKLLNERGCQPMYVGRYRITDDESLE-A 152

Query: 168 SMVLVGKVNKDL---------VSLINKAGATA----VGLSGMDGRLLMA--RPTPNSAQL 212
           +M   G +   +         +  I + G  +    VG+S   G  L A  R   N    
Sbjct: 153 AMEAAGGIRLMIEAKLSPGPSICNIRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGIDF 212

Query: 213 GFVGEVTRVDSTILQPLIDNSHIPVIASVAADESGQSYNINADTV 257
           G  GEV +VD T ++  +D   + V+ ++    SG+  N N   V
Sbjct: 213 GSTGEVKKVDVTRMRERLDGGCVVVLTNLGYSSSGEVLNCNTYEV 257


>Glyma01g40230.2 
          Length = 602

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 17/198 (8%)

Query: 75  DRFRVDILSESLPYIQKFRGKTIVVKYGGAAMKVPELKAXXXXXXXXXXCVGLRPVLVHG 134
           D+  V    E+ PY+  +RG T V+   G  +  P L             +G+R VLV G
Sbjct: 72  DKQFVRSFREAWPYLWAYRGSTFVIIISGEIVSGPFLDPILKDIAFLNH-LGIRFVLVPG 130

Query: 135 GGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDL---------VSLINK 185
              +I+  L     +P +    R+TD +++E  +M   G +   +         +  I +
Sbjct: 131 THVQIDKLLNERGCQPKYVGRYRITDDESLE-AAMEAAGGIRLMIEAKLSPGPSICNIRR 189

Query: 186 AGATA----VGLSGMDGRLLMA--RPTPNSAQLGFVGEVTRVDSTILQPLIDNSHIPVIA 239
            G  +    VG+S   G  L A  R   N    G  GEV +VD + ++  +D   + ++ 
Sbjct: 190 HGDNSRWHEVGVSVASGNFLAAKRRGVVNGIDFGSTGEVKKVDVSRMRERLDGGCVVILT 249

Query: 240 SVAADESGQSYNINADTV 257
           ++    SG+  N N   V
Sbjct: 250 NLGYSSSGEVLNCNTYEV 267