Jatropha Genome Database

JcCB0004861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004861.10 - phase: 0 /pseudo
         (337 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g36090.1                                                       184   1e-46
Glyma08g40810.1                                                       107   2e-23
Glyma08g26860.1                                                       105   5e-23
Glyma02g02450.1                                                       105   1e-22
Glyma14g39930.1                                                        82   1e-15
Glyma14g09090.1                                                        74   2e-13
Glyma17g38100.1                                                        52   6e-07

>Glyma17g36090.1 
          Length = 414

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/198 (48%), Positives = 116/198 (58%), Gaps = 47/198 (23%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWES K +GGWYN L N++P+LA++GITHVWLPPPS SVS E                
Sbjct: 29  GFNWESSK-KGGWYNSLKNTIPDLANAGITHVWLPPPSQSVSPEGYLPGRLYDLDASKYG 87

Query: 45  ------------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICS 74
                                         E++D RGI+ IFEGGTP  RLDWGPSFIC 
Sbjct: 88  TKDQLKSLIAAFHDKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDARLDWGPSFICK 147

Query: 75  DDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIF 134
           DD  YSDG GN D+G  ++PAPDIDH+NP+VQR LS+WM WLK EIGFDGWRFD+ +   
Sbjct: 148 DDNTYSDGTGNLDSGEPYDPAPDIDHLNPQVQRELSEWMNWLKTEIGFDGWRFDYVKGYA 207

Query: 135 TCFYKDINDKQKAKFCSG 152
               K   ++ +  F  G
Sbjct: 208 PSITKIYMEQTRPDFAVG 225



 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%)

Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTSQ 327
           LKE+I KL  +R ++ I   S +  LA++AD Y+A ID KI  K+GP  D GNL+PP   
Sbjct: 343 LKEQIAKLSSIRVKHGINEKSSVNILAAEADLYVAKIDNKIFLKIGPKMDLGNLIPPNFH 402

Query: 328 IAASGIDYTV 337
           +A SG DY V
Sbjct: 403 VATSGQDYAV 412


>Glyma08g40810.1 
          Length = 911

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 52/197 (26%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWES K+ G WY  L     ELAS G T +WLPPP+ SVS E                
Sbjct: 525 GFNWESHKS-GRWYMELKEKAAELASFGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGT 583

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                          ++  GIW++F     G RL+W    I +D
Sbjct: 584 IDELKDVVKTLHEVGIKVLGDAVLNHRCAHFKNQSGIWNLF-----GGRLNWDDRAIVAD 638

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
           D  +  G+GN  +G +F+ AP+IDH    V++ L +W+ W+++EIG+DGWR DF R  + 
Sbjct: 639 DPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMREEIGYDGWRLDFVRGFWG 697

Query: 136 CFYKDINDKQKAKFCSG 152
            + KD  +  +  F  G
Sbjct: 698 GYVKDYLEASEPYFAVG 714


>Glyma08g26860.1 
          Length = 481

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 53/197 (26%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWESW+    WY  L+    +L++ G+T VWLPPP+ SV+ +                
Sbjct: 92  GFNWESWRRR--WYLELAAKTADLSNCGVTAVWLPPPTESVAPQGYMPSDLYNLNSSYGS 149

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                        +KQ   G+W+IF     G +L WGP  I  D
Sbjct: 150 VEELKYCIEEMHSQDLLALGDVVLNHRCAQKQSPNGVWNIF-----GGKLAWGPEAIVCD 204

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
           D  +  G+GNP +G  F+ AP++DH    V++ + +W+ WL+++IGFDGWR DF R    
Sbjct: 205 DPNFQ-GRGNPSSGDIFHAAPNVDHSQDFVRKDIKEWLNWLRNDIGFDGWRLDFVRGFSG 263

Query: 136 CFYKDINDKQKAKFCSG 152
            + K+  +     F  G
Sbjct: 264 TYVKEYIEASTPVFAIG 280


>Glyma02g02450.1 
          Length = 881

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 89/197 (45%), Gaps = 52/197 (26%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
            FNWES K+ G WY  L     ELAS G T VWLPPP+ SVS E                
Sbjct: 495 AFNWESHKS-GRWYIELKEMASELASLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGN 553

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                          Q+  GIW+IF     G  L+W    + +D
Sbjct: 554 IDELKDLVKRFHEVGIKVLGDAVLNHRCAHYQNQNGIWNIF-----GGPLNWDDRAVVAD 608

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
           D  +  G+GN  +G +F+ AP+IDH    V++ L +W+ WL+ E+G+DGWR DF R  + 
Sbjct: 609 DPHFQ-GRGNKSSGDNFHAAPNIDHSQEFVRKDLKEWLCWLRKEVGYDGWRLDFVRGFWG 667

Query: 136 CFYKDINDKQKAKFCSG 152
            + KD  D  +  F  G
Sbjct: 668 GYVKDYIDASEPYFSVG 684


>Glyma14g39930.1 
          Length = 413

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 87/209 (41%), Gaps = 60/209 (28%)

Query: 2   FNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE----------------- 44
           FNWES K    W+N L   V ++A +G T VWLPPP+HS S E                 
Sbjct: 32  FNWESNKYN--WWNNLEGKVSDIAKAGFTSVWLPPPTHSFSPEGYTPQNLYSLNSKYGSE 89

Query: 45  ----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSDD 76
                                         Q   G+++ F+G  P   L W    + SD 
Sbjct: 90  RQLKALLQKMKQYKVRAMADIVINHRTGTTQGRGGMYNRFDG-IP---LGWDERAVTSD- 144

Query: 77  TLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFTC 136
              S G GN  TGA F   P+IDH    V++ +  W+ WL+ E+GF  +RFDF +     
Sbjct: 145 ---SGGLGNRSTGAIFQGFPNIDHTQDFVRKDIIGWLRWLRHEVGFQDFRFDFVKGFSPK 201

Query: 137 FYKDINDKQKAKFCSGG-----NMEGSCL 160
           + K+  +  K  FC G      N +GS L
Sbjct: 202 YVKEYIEGAKPLFCVGEYWDSCNYKGSTL 230


>Glyma14g09090.1 
          Length = 90

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 45/68 (66%)

Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTSQ 327
           LKE I K+ E+R RN +   S +  LA++AD YMA ID KII K+GP  D  NL+PP  Q
Sbjct: 22  LKEPIKKVTEIRKRNGVTATSRVNILAAEADLYMAEIDNKIIVKIGPKMDLVNLLPPNVQ 81

Query: 328 IAASGIDY 335
           +A SG DY
Sbjct: 82  VATSGQDY 89


>Glyma17g38100.1 
          Length = 249

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 73  CSDDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARR 132
           C      S  KGN  TG  F+  P+IDH    V++ +  W+ WL+ E+GF  +RF F + 
Sbjct: 10  CRHQLTPSHLKGNRSTGDIFHGFPNIDHTKDFVRKDIIGWLRWLRHEVGFHDFRFGFVKG 69

Query: 133 IFTCFYKDINDKQKAKFCSGG-----NMEGSCL 160
               + K+  +  K  FC G      N +GS L
Sbjct: 70  FSPKYVKEYIEGAKPLFCVGEYWHSCNYKGSTL 102